v1.1.0
What's Changed
✨ Feature
- [finemapping] ingest finngen r10 finemapping w/ airflow (#435) @xyg123
- [finemapping] susie method (#398) @Daniel-Considine
- [dataset] add
Dataset.filter
to create a new dataset instance with filtered data (#470) @Irene López - [LD] include leads with R2=1 in the ldSet when not found in LDIndex (#453) @David Ochoa
📖 Documentation
- [StudyLocusQualityCheck] update outdated attributes (#452) @David Ochoa
- add gentropy first steps guide (#449) @Irene López
- pypi badges (#439) @David Ochoa
🏗 Build
- [deps-dev] bump google-cloud-dataproc from 5.8.0 to 5.9.0 (#468) @dependabot[bot]
- [deps-dev] bump pytest-sugar from 0.9.7 to 1.0.0 (#467) @dependabot[bot]
- [deps-dev] bump ipython from 8.20.0 to 8.21.0 (#466) @dependabot[bot]
- [deps-dev] bump ruff from 0.1.8 to 0.2.0 (#465) @dependabot[bot]
- [deps] bump scikit-learn from 1.3.2 to 1.4.0 (#444) @dependabot[bot]
- [deps] bump pandas from 2.1.4 to 2.2.0 (#443) @dependabot[bot]
- [deps-dev] bump ipykernel from 6.28.0 to 6.29.0 (#442) @dependabot[bot]
- [deps] bump numpy from 1.26.2 to 1.26.3 (#441) @dependabot[bot]
- [deps-dev] bump ipython from 8.19.0 to 8.20.0 (#445) @dependabot[bot]
👷♂️ Ci
- ignore patch versions in dependabot (#462) @David Ochoa
🚀 Chore
- merge dev @David Ochoa
- minor updates to gwas catalog pathnames (#440) @Irene López
- [deps] bump codecov/codecov-action from 3 to 4 (#464) @dependabot[bot]
- harmonizing finngen configuration (#454) @Daniel Suveges
- [deps] bump actions/upload-artifact from 3 to 4 (#447) @dependabot[bot]
- [deps] bump actions/download-artifact from 3 to 4 (#448) @dependabot[bot]
- [deps] bump actions/cache from 3 to 4 (#446) @dependabot[bot]