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    84 repositories

    • ZincJS

      Public
      JS interface to Zinc output for displaying 3D anatomical models
      JavaScript
      •
      MIT License
      •11•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • scaffoldmaker

      Public
      Anatomical scaffold generator using Zinc
      Python
      •
      Other
      •35•1•6•5•Updated Feb 4, 2025Feb 4, 2025

    • scaffoldfitter

      Public
      A repository for fitting anatomical scaffolds to data.
      Python
      •
      Other
      •15•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • mapclientplugins.geometryfitter

      Public
      MAP Client plugin for geometric fitting of meshes using CMLibs Zinc.
      Python
      •
      Other
      •13•0•1•0•Updated Feb 3, 2025Feb 3, 2025

    • mapclientplugins.fieldfitterstep

      Public
      MAP Client plugin for fitting fields over meshes using OpenCMISS-Zinc.
      Python
      •
      Other
      •4•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • mapclientplugins.segmentationstitcherstep

      Public
      MAP-Client plugin for interactively transforming and stitching segmentation files.
      Python
      •
      Other
      •2•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • mbfxml2ex

      Public
      A small Python application and library to take MBF Bioscience XML and transform it into ex format.
      Python
      •
      Apache License 2.0
      •10•1•2•0•Updated Feb 2, 2025Feb 2, 2025

    • flatmapvuer

      Public
      Vue component of Flatmap viewer
      Vue
      •
      Apache License 2.0
      •6•0•0•6•Updated Jan 30, 2025Jan 30, 2025

    • map-sidebar

      Public
      A side bar for user in sparc.science
      Vue
      •
      Apache License 2.0
      •9•0•0•6•Updated Jan 30, 2025Jan 30, 2025

    • segmentationstitcher

      Public
      Library for stitching together networks and contours segmented from multiple adjacent image blocks, including computing their relative transformations.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • mapintegratedvuer

      Public
      Integrated Map Vuer
      Vue
      •
      Apache License 2.0
      •11•1•1•6•Updated Jan 27, 2025Jan 27, 2025

    • scaffoldvuer

      Public
      PhysiomePortal Scaffold Viewer as a Vue Component
      Vue
      •
      Apache License 2.0
      •7•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • map-utilities

      Public
      Repository for common Vue 3 components used by MAP components
      Vue
      •
      Apache License 2.0
      •4•0•0•4•Updated Jan 17, 2025Jan 17, 2025

    • scicrunch-knowledge-testing

      Public
      Tests for checking the information on discover and elastic search are consistent.
      Python
      •
      Apache License 2.0
      •5•0•0•2•Updated Jan 15, 2025Jan 15, 2025

    • AnnotationToCOMPOSER

      Public
      Python script to translate annotation to COMPOSER CSV format
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • sparc-app

      Public
      Web Application for the SPARC Portal
      Vue
      •
      Apache License 2.0
      •17•1•0•0•Updated Dec 9, 2024Dec 9, 2024

    • sparc-curation-tools

      Public
      A collection of tools to help with curating SPARC datasets.
      Python
      •
      Other
      •4•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • mapclientplugins.scaffoldcreator

      Public
      MAP Client plugin for generating meshes via scripts using OpenCMISS-Zinc.
      Python
      •
      Apache License 2.0
      •21•0•2•1•Updated Dec 3, 2024Dec 3, 2024

    • plotvuer

      Public
      Process and display csv files as charts for vue. Designed specifically for use in the SPARC project
      Vue
      •
      Apache License 2.0
      •5•1•0•0•Updated Nov 27, 2024Nov 27, 2024

    • simulationvuer

      Public
      Vue component for a CellML-based simulation viewer.
      Vue
      •
      Apache License 2.0
      •4•0•1•0•Updated Nov 27, 2024Nov 27, 2024

    • vue-component-template

      Public template
      JavaScript
      •0•1•0•0•Updated Oct 9, 2024Oct 9, 2024

    • svg-sprite

      Public
      Npm package for efficiently loading svg's in vue
      JavaScript
      •5•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • mapcore-gallery

      Public
      A gallery widget for MAPcore written for Vue3
      Vue
      •
      Apache License 2.0
      •6•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • sparc-dataset-curation-test-resources

      Public
      Test resources for the SPARC dataset curation tool
      1•0•0•0•Updated Sep 7, 2024Sep 7, 2024

    • sparc-dataset-tools

      Public
      A tool to assist with the creation of SPARC scaffold datasets.
      Python
      •
      Other
      •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • TARA-ScaffoldVuer

      Public
      TARA interface of ScaffoldVuer
      Vue
      •1•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • ftuutils

      Public
      Library to create discrete Functional Tissue Units
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • ScaffoldAnnotator

      Public
      Local annotator for scaffoldvuer
      Vue
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • ScaffoldVuer-Template

      Public template
      A template for app builds on top of ScaffoldVuer
      JavaScript
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • image-dialog

      Public
      Vue
      •
      Apache License 2.0
      •2•0•0•1•Updated Apr 22, 2024Apr 22, 2024