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    211 repositories

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Feb 27, 2025Feb 27, 2025

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•1•2•1•Updated Feb 27, 2025Feb 27, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•1•Updated Feb 27, 2025Feb 27, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •42•11•0•6•Updated Feb 26, 2025Feb 26, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•52•0•7•Updated Feb 26, 2025Feb 26, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •28•5•0•3•Updated Feb 26, 2025Feb 26, 2025

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•1•0•0•Updated Feb 26, 2025Feb 26, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•1•Updated Feb 26, 2025Feb 26, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•2•Updated Feb 25, 2025Feb 25, 2025

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •157•470•51•8•Updated Feb 25, 2025Feb 25, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•1•Updated Feb 25, 2025Feb 25, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •77•81•1•1•Updated Feb 24, 2025Feb 24, 2025

    • gene_symbol_transformer

      Public
      Transformer model for gene symbol assignment of protein coding sequences
      Python
      •
      Apache License 2.0
      •0•3•0•9•Updated Feb 23, 2025Feb 23, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •121•144•4•4•Updated Feb 21, 2025Feb 21, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•1•Updated Feb 21, 2025Feb 21, 2025

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •0•2•0•2•Updated Feb 20, 2025Feb 20, 2025

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Feb 20, 2025Feb 20, 2025

    • ensembl-metadata

      Public
      API for storing and querying metadata from Ensembl and EnsemblGenomes
      Perl
      •
      Apache License 2.0
      •5•5•0•1•Updated Feb 20, 2025Feb 20, 2025

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      3•2•0•2•Updated Feb 18, 2025Feb 18, 2025

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•3•0•0•Updated Feb 18, 2025Feb 18, 2025

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•4•Updated Feb 18, 2025Feb 18, 2025

    • ensembl-production-services

      Public
      Ensembl production service portal
      djangodjango-rest-frameworkpython3
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Feb 17, 2025Feb 17, 2025

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•2•Updated Feb 17, 2025Feb 17, 2025

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • ensembl-taxonomy

      Public
      API for accessing NCBI taxonomy
      apiperlncbi-taxonomyensembl
      Perl
      •
      Apache License 2.0
      •2•1•0•0•Updated Feb 11, 2025Feb 11, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •56•27•0•11•Updated Feb 7, 2025Feb 7, 2025

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •5•1•0•4•Updated Feb 7, 2025Feb 7, 2025

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•10•1•3•Updated Feb 6, 2025Feb 6, 2025

    • ensembl-funcgen

      Public
      Ensembl Funcgen Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •17•14•0•0•Updated Feb 4, 2025Feb 4, 2025