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    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      HTML
      Other
      4638587Updated Nov 27, 2024Nov 27, 2024
    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      41300Updated Nov 26, 2024Nov 26, 2024
    • R
      3001Updated Nov 26, 2024Nov 26, 2024
    • Shiny app for visualizing TARGET pediatric AML data
      HTML
      22100Updated Nov 26, 2024Nov 26, 2024
    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      Creative Commons Zero v1.0 Universal
      00203Updated Nov 25, 2024Nov 25, 2024
    • Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Taylor Firman.
      R
      MIT License
      33652Updated Nov 25, 2024Nov 25, 2024
    • R
      MIT License
      0000Updated Nov 25, 2024Nov 25, 2024
    • Contains info and code examples for the SEATRAC TB Hackday 2024
      HTML
      GNU General Public License v3.0
      0020Updated Nov 23, 2024Nov 23, 2024
    • Howto and implementation documentation
      C++
      62160Updated Nov 22, 2024Nov 22, 2024
    • EBcb

      Public
      EasyBuild container build - A docker container for building software with EasyBuild
      Shell
      1700Updated Nov 22, 2024Nov 22, 2024
    • Collection of Nextflow tools for using CellRanger
      Nextflow
      MIT License
      1000Updated Nov 21, 2024Nov 21, 2024
    • pgmap

      Public
      R
      1031Updated Nov 20, 2024Nov 20, 2024
    • Remove processes without Slurm Job
      Python
      MIT License
      0000Updated Nov 20, 2024Nov 20, 2024
    • tfcb_2024

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2024
      Jupyter Notebook
      19302Updated Nov 19, 2024Nov 19, 2024
    • Base Docker container for R Shiny apps
      R
      Apache License 2.0
      9610Updated Nov 13, 2024Nov 13, 2024
    • Nextflow workflow for performing quality control analysis of VirScan datasets
      Nextflow
      0100Updated Nov 8, 2024Nov 8, 2024
    • Docker image with libraries needed to run proSCessoR
      Dockerfile
      0000Updated Nov 7, 2024Nov 7, 2024
    • Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
      Jupyter Notebook
      MIT License
      2100Updated Nov 7, 2024Nov 7, 2024
    • Simplify interaction with AWS Batch at Fred Hutch
      Python
      0116Updated Nov 7, 2024Nov 7, 2024
    • Tools for writing reproducible reports at VISC
      R
      Other
      26365Updated Nov 6, 2024Nov 6, 2024
    • SANI

      Public
      Suspended Animation Neuron Identifier
      MATLAB
      MIT License
      0000Updated Nov 5, 2024Nov 5, 2024
    • This is the code used for data analysis in the Wellington et al. 2024 paper.
      R
      0000Updated Nov 2, 2024Nov 2, 2024
    • Code supporting "Predictimands for Salvage Therapy in Biochemically Recurrent Prostate Cancer Using Joint Longitudinal and Failure Time Models"
      0000Updated Oct 27, 2024Oct 27, 2024
    • A Shiny app for interactive visualization of RNA quality control statistics
      R
      0100Updated Oct 22, 2024Oct 22, 2024
    • dmshelper

      Public
      ✏️ A tool for composing your NIH Data Sharing Plan
      CSS
      1020Updated Oct 22, 2024Oct 22, 2024
    • Homepage for BioDIGS Project. Learn about the project and download data.
      R
      MIT License
      01100Updated Oct 22, 2024Oct 22, 2024
    • ITN Dashboard for data generated from metricminer
      R
      0050Updated Oct 13, 2024Oct 13, 2024
    • R
      0000Updated Oct 4, 2024Oct 4, 2024
    • Utilities for microbiome pipelines
      Python
      MIT License
      0000Updated Oct 3, 2024Oct 3, 2024
    • R
      Other
      410171Updated Oct 2, 2024Oct 2, 2024