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    20 repositories

    • web_application_spatialGE

      Public
      Web application to interface the spatialGE R package
      CSS
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • spatialGE

      Public
      An R package for visualization and analysis of spatially-resolved gene expression
      R
      •
      Other
      •6•13•1•0•Updated Oct 26, 2024Oct 26, 2024

    • spatialTIME

      Public
      R
      •
      Other
      •4•3•3•0•Updated Oct 16, 2024Oct 16, 2024

    • ccRCC_CosMx_SMI_2023

      Public
      R
      •0•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • scSpatialSIM

      Public
      R package for the simulation of single-cell molecular spatial data on point patterns
      R
      •
      Other
      •0•4•1•0•Updated Oct 1, 2024Oct 1, 2024

    • landscape_sarcomas_orien

      Public
      Code to reproduce the results of the manuscript "Genomic, transcriptomic, and immunogenomic landscape of over 1,300 sarcomas of diverse histology subtypes: a report from the ORIEN collaborative network"
      HTML
      •0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • diff_expression_spatial_linear_models

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • spatial_transcriptomics_leptomeningeal_disease

      Public
      R
      •1•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • MetaboliteAnnotationDocker

      Public
      Docker container for annotating metabolites
      R
      •1•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • Intro_to_R_2023

      Public
      Materials for Intro to R class for summer of 2023
      HTML
      •0•5•0•0•Updated Jul 13, 2023Jul 13, 2023

    • Intro_to_R_2022

      Public
      Materials related to the Introduction to R USF course during Summer 2022
      HTML
      •2•4•0•0•Updated Mar 2, 2023Mar 2, 2023

    • BTIME

      Public
      Bayesian analysis of multiplex immunofluorescence data
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

    • iTIME

      Public
      interactive Tumor Immune MicroEnvironment
      JavaScript
      •6•4•1•0•Updated Sep 9, 2022Sep 9, 2022

    • ST_book_chapter

      Public
      A primer on pre-processing, visualization, clustering, and phenotyping of barcode-based spatial transcriptomics data (from the book "Statistical Genomics") – Code to generate images in the the chapter
      R
      •
      Other
      •0•0•0•0•Updated Jul 26, 2022Jul 26, 2022

    • ASA_SMI_2022

      Public
      slides and materials for ASA Statistical Methods in Imaging mini-course
      HTML
      •0•1•0•0•Updated May 25, 2022May 25, 2022

    • Introduction-to-R

      Public
      Materials and information on Moffitt Cancer Center's introductory course for R and Rstudio.
      HTML
      •5•4•1•0•Updated May 9, 2022May 9, 2022

    • GEVisor

      Public
      Visualization of gene expression data from GeoMx-DSP experiments
      Jupyter Notebook
      •
      MIT License
      •2•2•1•1•Updated Dec 20, 2021Dec 20, 2021

    • Permuted_Ripley_K

      Public
      R
      •0•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • lab_hex

      Public
      R
      •0•0•0•0•Updated Sep 18, 2020Sep 18, 2020

    • fridleylab-com

      Public
      Website source for the Fridley Lab website
      JavaScript
      •0•0•0•0•Updated Jul 14, 2020Jul 14, 2020