Repositories list

• baudisgroup.github.io

  Public
  Website of the Computational Cancer Genomics Group at the University of Zurich

  HTML

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• labelSeg

  Public
  R

  •

  GNU General Public License v3.0

  •0•4•0•0•Updated Mar 28, 2024Mar 28, 2024

• segment-liftover

  Public
  Lifterover copy number segments in whole

  probecopy-numbersegment+ 2liftoverucsc-liftover

  Python

  •

  MIT License

  •4•23•0•0•Updated Feb 6, 2024Feb 6, 2024

• mecan4cna

  Public
  Minimum Error Calibration and Normalization for Copy Number Analysis

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

• AM_process2.0

  Public
  R

  •0•0•0•0•Updated Jul 4, 2023Jul 4, 2023

• info.baudisgroup.beta

  Public
  mkdocs implementation of the baudisgroup website

  Python

  •0•0•0•0•Updated Jul 7, 2022Jul 7, 2022

• AM_process

  Public
  SNP array process pipeline

  Perl

  •0•0•0•0•Updated Nov 4, 2021Nov 4, 2021

• classifications_heterogeneity

  Public
  0•0•0•0•Updated May 16, 2021May 16, 2021

• cancer-signatures

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 30, 2021Apr 30, 2021

• progenetix-publication-tools

  Public
  Scripts and resources to support the Progenetix publications collection

  Python

  •0•0•0•0•Updated Apr 7, 2021Apr 7, 2021

• vcfExporter

  Public
  Python

  •0•0•0•0•Updated Jan 12, 2021Jan 12, 2021

• snp2pop

  Public
  Population origin mapping from cancer SNP profile into 5 continental groups or 26 population groups as defined in 1000 Genomes Project.

  OpenEdge ABL

  •0•4•0•0•Updated Jan 2, 2021Jan 2, 2021

• vcfconverter

  Public
  Python

  •0•0•0•0•Updated Nov 18, 2020Nov 18, 2020

• lszgs-map

  Public
  CSS

  •0•0•0•0•Updated Oct 9, 2020Oct 9, 2020

• arraymap_examples

  Public
  Python

  •0•0•0•0•Updated Mar 8, 2019Mar 8, 2019

• arraymap2ga4ghscripts

  Public archive
  Python

  •0•0•0•0•Updated Nov 9, 2018Nov 9, 2018

• tum2pop-mapping

  Public
  OpenEdge ABL

  •

  MIT License

  •1•0•0•0•Updated Jul 6, 2018Jul 6, 2018

• icdo2ncit

  Public archive
  Python

  •0•0•0•0•Updated Jan 18, 2018Jan 18, 2018

• tcga2ga4gh

  Public
  Python

  •0•0•0•0•Updated Jan 9, 2018Jan 9, 2018

• CNARA

  Public
  Reliability assessment for genomic copy number profiles

  HTML

  •1•0•0•0•Updated Aug 27, 2017Aug 27, 2017

• arraymapRemapper

  Public
  Python

  •0•0•0•0•Updated Jun 8, 2017Jun 8, 2017

• dataapi

  Public archive
  Python

  •0•0•0•0•Updated Nov 15, 2016Nov 15, 2016

• update_arraymap

  Public archive
  Perl

  •0•0•0•0•Updated Feb 8, 2016Feb 8, 2016