Repositories list

• paramix

  Public
  a package for aggregating parameters and disaggregating outcomes from compartmental models

  R

  •

  Other

  •0•2•0•0•Updated Nov 9, 2024Nov 9, 2024

• gettingstarted

  Public
  Some useful resources for new starters

  0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• .github

  Public
  0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• ab_boosting_published

  Public
  R

  •0•1•0•0•Updated Oct 30, 2024Oct 30, 2024

• comix_mobility

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• mtm

  Public
  R

  •

  Other

  •1•0•2•0•Updated Sep 13, 2024Sep 13, 2024

• effestimator

  Public
  R

  •1•2•0•0•Updated Aug 21, 2024Aug 21, 2024

• rsvie

  Public
  C++

  •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• covidbcell

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jul 2, 2024Jul 2, 2024

• ringbp

  Public
  R

  •

  Other

  •23•53•0•0•Updated Jan 18, 2024Jan 18, 2024

• rsvmabmat

  Public
  R

  •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

• covidm_reports

  Public
  LMIC reports using the covidm model framework

  R

  •6•10•1•2•Updated Oct 5, 2023Oct 5, 2023

• covid_quar_test_import_risk

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Jun 30, 2023Jun 30, 2023

• MTM-2023

  Public
  MTM material, 2023 (package) version

  R

  •

  Other

  •6•2•17•1•Updated May 13, 2023May 13, 2023

• cmmid.github.io

  Public
  HTML

  •14•33•2•1•Updated May 8, 2023May 8, 2023

• hhh4-workshop

  Public
  Workshop on hhh4 and the endemic-epidemic framework

  HTML

  •4•16•1•0•Updated Oct 13, 2022Oct 13, 2022

• SA2UK

  Public
  R

  •0•9•1•0•Updated Aug 9, 2022Aug 9, 2022

• rsv_resceu_compare

  Public
  Code for the RESCEU model comparison work

  C++

  •0•0•0•0•Updated Mar 29, 2022Mar 29, 2022

• hero-study

  Public
  R

  •0•4•0•0•Updated Mar 1, 2022Mar 1, 2022

• quar_test_contact_tracing

  Public
  R

  •4•3•1•0•Updated Oct 14, 2021Oct 14, 2021

• covidTestVac

  Public
  TeX

  •

  MIT License

  •0•0•0•0•Updated Sep 29, 2021Sep 29, 2021

• pcr_entry_screening_eurosurv

  Public
  R

  •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• coronavirus_immunity

  Public
  code for paper - fitting seasonal coronavirus and simulating covid

  R

  •

  MIT License

  •1•0•0•0•Updated Sep 6, 2021Sep 6, 2021

• uk_fb_population_estimation

  Public
  Repository for source code to estimate population changes in the UK with Facebook population data

  R

  •

  MIT License

  •0•1•0•0•Updated Aug 17, 2021Aug 17, 2021

• vaxco

  Public
  R

  •1•3•0•0•Updated Jul 29, 2021Jul 29, 2021

• SoftwareChatter

  Public
  Software engineering discussion group resources

  HTML

  •2•4•0•0•Updated Jul 26, 2021Jul 26, 2021

• uk_movement_communities_covid

  Public
  Repository of code for the publication: "Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19." Gibbs et al. 2021.

  R

  •

  MIT License

  •1•2•1•0•Updated May 21, 2021May 21, 2021

• pcr-profile

  Public
  R

  •12•10•0•1•Updated May 18, 2021May 18, 2021

• epinow2_hpcarray

  Public
  used for R estimation supporting covidm_reports repository analysis

  R

  •0•2•0•0•Updated Oct 23, 2020Oct 23, 2020

• travel_screening_strategies

  Public
  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Aug 7, 2020Aug 7, 2020