Computational Systems Biology Group

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9 repositories

Hands-on-Biomedical-Data
Public
Practical exercises for the course "Hands-on Biomedical Data - Resources and Analysis Tools"
0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
fibroblast-perturb-seq-analysis
Public
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Nov 4, 2024Nov 4, 2024
SplineOmics
Public
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. For this, the right spline freedom and further hyperparameters must be identified, and the obtained hits clustered based on the spline shape.The R package SplineOmics streamlines this whole process and generates reports
timeseries cluster splines omics limma
R
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MIT License
•0•1•0•0•Updated Oct 29, 2024Oct 29, 2024
SplineOmics_html_reports
Public
Stores the HTML reports that are the output of the functions of the SplineOmics package, so that they can be linked in the documentation of the actual SplineOmics package, without placing those big files there.
HTML
•0•0•0•0•Updated Sep 26, 2024Sep 26, 2024
BioinformaticsPracticals1
Public
Student resources for UE Bioinformatische Übungen I
python bash
CSS
•0•0•0•0•Updated Sep 11, 2024Sep 11, 2024
neuroblastoma
Public
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
scrna-seq single-cell heterogeneity metastasis scatac-seq bone-marrow neuroblastoma monocytes microenvironment
Jupyter Notebook
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MIT License
•1•9•0•0•Updated Dec 11, 2023Dec 11, 2023
pnet_robustness
Public
Reliable interpretability of biology-inspired deep neural networks
neural-networks network-analysis interpretability deep-learning
R
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MIT License
•0•3•0•0•Updated Oct 11, 2023Oct 11, 2023
tfcf
Public
Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.
R
•1•6•1•0•Updated Jul 6, 2023Jul 6, 2023
Allergy_clinical_trial
Public
HTML
•0•0•0•0•Updated Apr 20, 2023Apr 20, 2023