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    5 repositories

    • decoil-paper

      Public
      Scripts and analysis for the Giurgiu et al. 2024. Genome Research. "Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data using Decoil".
      nanoporeheterogeneityecdnareconstruction-algorithm
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Oct 14, 2024Oct 14, 2024

    • scEC-T-seq

      Public
      HTML
      •
      MIT License
      •0•4•0•0•Updated May 11, 2023May 11, 2023

    • circle-enrich-filter

      Public
      Pipeline to identify candidate circular regions in sequencing data.
      Shell
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 16, 2023Apr 16, 2023

    • mutsignsNBLpaper

      Public
      Repository of the scripts used in Rodriguez-Fos, et al. paper entitled "Mutational topography reflects clinical neuroblastoma heterogeneity"
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 9, 2023Feb 9, 2023

    • nano-wgs

      Public
      Snakemake pipeline for Nanopore WGS processing
      Shell
      •1•0•0•0•Updated Aug 16, 2022Aug 16, 2022