Repositories list

• utils

  Public
  R scripts useful for working with the IBA data

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• IBA_R_package

  Public
  Repository for IBA R package

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

• happ

  Public
  Workflow for processing deep metabarcoding data

  Python

  •0•1•0•0•Updated Jan 4, 2025Jan 4, 2025

• paper-bioinformatic-methods

  Public
  Repo for figures and scripts associated with paper on bioformatic methods within IBA

  R

  •0•0•0•0•Updated Dec 15, 2024Dec 15, 2024

• paper-lep-efficiency

  Public
  Repository with data and code for the ms on evaluating IBA efficiency using Swedish Lepidoptera

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• paper-metagenomics

  Public
  Data and code for matching metagenomic and metabarcoding results, used in Lopez-Clinton et al ms.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• amplicon-multi-cutadapt

  Public
  Preprocessing of amplicon sequencing reads via a 4-step cutadapt workflow

  Python

  •2•1•0•0•Updated Nov 12, 2024Nov 12, 2024

• ASV-taxonomy

  Public
  Python

  •0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• coidb

  Public
  A small python package for downloading and processing metabarcoding references

  Python

  •

  MIT License

  •1•0•0•0•Updated May 11, 2024May 11, 2024

• utils-clean_asv_data

  Public
  Code to clean up ASV clustering results and generate stats

  Python

  •

  MIT License

  •0•0•4•0•Updated Feb 21, 2024Feb 21, 2024