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@signalingsystemslab Signaling Systems Lab

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    19 repositories

    • polarized_macs_NFkB_response_dynamics

      Public
      Code for QC metrics and informative feature calculations as described in Stimulus-Response signaling dynamics characterize macrophage polarization states (Singh et al. 2023)
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated May 1, 2024May 1, 2024

    • mTFP1-cRel_DirectObservationBcells

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • nfkbktr

      Public
      Python
      •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • CombinatorialSignalingMacrophages_p38NFkB

      Public
      Scripts and functions to analyse "Combinatorial and temporal coding by MAPK p38 and NFκB in the inflammatory response of macrophages": Mutual information, stimulus classification by machine learning, dose response analysis, correlations of dynamic features
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • MACKtrack-for-NFkappaB-and-p38-dynamics

      Public
      MACKtrack software for automated tracking and fluorescence quantification of live cell microscopy images, based on Brooks Taylor's original code, edited for simultaneous analysis of p38 MAPK and NFkB signaling dynamics
      MATLAB
      •1•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • GitGuide

      Public
      Guide to using git/github for the signaling systems lab
      1•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • IFN-GeneRegulation

      Public
      MATLAB
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • IFN-signaling

      Public
      MATLAB
      •0•0•0•0•Updated Dec 4, 2022Dec 4, 2022

    • ResponseSpecificity

      Public
      Quantifying macrophage Response Specificity
      HTML
      •0•0•0•0•Updated Nov 6, 2022Nov 6, 2022

    • mRNA-nuclear-export

      Public
      Innate immune response gene expression is regulated by mRNA nuclear export kinetics
      R
      •0•1•0•0•Updated Jul 2, 2022Jul 2, 2022

    • TNFKO_NFkB_dynamics_modeling

      Public
      simulation for non-oscillation NFkB signal in TNF-/- in repsonse to TNF
      MATLAB
      •1•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • nucleosome_stochasticModel

      Public
      R
      •1•0•0•0•Updated Apr 29, 2022Apr 29, 2022

    • Differentiation-process-of-dendritic-cell

      Public
      MATLAB
      •1•2•0•0•Updated May 18, 2021May 18, 2021

    • NFkB_enhancer_dynamics

      Public
      MATLAB
      •0•0•0•0•Updated Apr 17, 2021Apr 17, 2021

    • Early_B_Lymphopoiesis_Project

      Public
      Python
      •1•0•0•0•Updated Jan 12, 2021Jan 12, 2021

    • dMI

      Public
      MATLAB
      •
      Other
      •2•3•0•0•Updated Jan 12, 2021Jan 12, 2021

    • ActDAnalyser

      Public
      R
      •1•1•0•0•Updated Jun 18, 2020Jun 18, 2020

    • nfkb_dynamic_features

      Public
      MATLAB
      •1•0•0•0•Updated Oct 7, 2019Oct 7, 2019

    • MACKtrack

      Public
      Automated cell tracking package for MATLAB
      MATLAB
      •13•0•0•0•Updated Feb 21, 2019Feb 21, 2019