Add pip packaging #4200
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ####################################### | |
| # Ideally this would be done in seperate workflows but placing them all | |
| # in one is currently necessary to enforce job dependencies | |
| ####################################### | |
| ####################################### | |
| # Note the use of multiple checkout actions in most jobs. This has been | |
| # implemented to allow the use of CI scripts at a different ref or sha than | |
| # the source code they're evaluating. For push events (when a pull_request is | |
| # merged) there is no difference. However, for pull_request events this allows | |
| # us test code at the head of a pull_request using the CI scripts from the | |
| # prospectively merged pull_request, which will include any CI updates that | |
| # may have made it to the target branch after the pull_request was started. | |
| ####################################### | |
| ####################################### | |
| # Note regarding restore/save of cache for use by ccache: | |
| # | |
| # We only save cache on main branch runs. PR workflows only consume the | |
| # cache to avoid exceeding the 10 GB limit, which can cause cache thrashing. | |
| # Also, we only save the cache if there was *not* an exact match when cache | |
| # was restored. This avoids attempting to write to an existing cache key, | |
| # which results in failure to save the cache. While failure to save doesn't | |
| # cause job failures, it seems a waste and is easily avoidable. | |
| ####################################### | |
| name: GitHub Actions | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - release* | |
| pull_request: | |
| branches: | |
| - master | |
| - release* | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| ####################################### | |
| # Git checks | |
| ####################################### | |
| git_checks: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| num_code_changes: ${{ steps.get_code_changes.outputs.num_code_changes }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check for appropriately named topic branch | |
| run: | | |
| scripts/ci/gh-actions/check-branch-name.sh | |
| - name: Check for code changes | |
| id: get_code_changes | |
| run: | | |
| scripts/ci/gh-actions/get-changed-files.sh | |
| echo "::group::Test script output files" | |
| ls -la *-changed-files.txt | |
| NUM_CHANGES=$(wc -l < filtered-changed-files.txt) | |
| echo "Number of files changed (filtered): ${NUM_CHANGES}" | |
| echo "::set-output name=num_code_changes::${NUM_CHANGES}" | |
| ####################################### | |
| # Formatting jobs | |
| ####################################### | |
| format: | |
| needs: git_checks | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-formatting | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: CXX | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-clang-format.sh | |
| - name: Python | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-flake8.sh | |
| - name: Shell | |
| working-directory: source | |
| run: ../gha/scripts/ci/scripts/run-shellcheck.sh | |
| ####################################### | |
| # Build and test jobs | |
| ####################################### | |
| linux_ubuntu: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} | |
| options: --shm-size=1g | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu20.04] | |
| compiler: [gcc8, gcc9, gcc10, gcc11, clang6, clang10] | |
| shared: [shared] | |
| parallel: [mpich] | |
| include: | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| parallel: ompi | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| parallel: serial | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| parallel: ompi | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| parallel: serial | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| shared: static | |
| parallel: ompi | |
| constrains: build_only | |
| - os: ubuntu20.04 | |
| compiler: clang6 | |
| shared: static | |
| parallel: ompi | |
| constrains: build_only | |
| - os: ubuntu20.04 | |
| compiler: gcc8 | |
| shared: static | |
| parallel: serial | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Restore cache | |
| uses: actions/cache/restore@v3 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | |
| - name: Save cache | |
| uses: actions/cache/save@v3 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| if: ${{ matrix.constrains != 'build_only' }} | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| linux_el8: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }} | |
| options: --shm-size=1g | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [el8] | |
| compiler: [icc, oneapi] | |
| parallel: [mpich] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Restore cache | |
| uses: actions/cache/restore@v3 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | |
| - name: Save cache | |
| uses: actions/cache/save@v3 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| macos: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ${{ matrix.image }} | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: macOS | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" | |
| CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos11, macos12] | |
| parallel: [serial] | |
| include: | |
| - os: macos11 | |
| image: macos-11 | |
| compiler: xcode13_0 | |
| - os: macos12 | |
| image: macos-12 | |
| compiler: xcode13_4_1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/macos-setup.sh | |
| - name: Restore cache | |
| uses: actions/cache/restore@v3 | |
| id: restore-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| - name: Configure cache | |
| run: ccache -z | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Print ccache statistics | |
| run: ccache -s | |
| - name: Save cache | |
| uses: actions/cache/save@v3 | |
| if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} | |
| id: save-cache | |
| with: | |
| path: .ccache | |
| key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| windows: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ${{ matrix.image }} | |
| env: | |
| GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} | |
| GH_YML_BASE_OS: Windows | |
| GH_YML_MATRIX_OS: ${{ matrix.os }} | |
| GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} | |
| GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [win2019, win2022] | |
| parallel: [serial, ompi] | |
| include: | |
| - os: win2019 | |
| image: windows-2019 | |
| compiler: vs2019 | |
| - os: win2022 | |
| image: windows-2022 | |
| compiler: vs2022 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Setup | |
| shell: pwsh | |
| run: gha/scripts/ci/gh-actions/windows-setup.ps1 | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Test | |
| run: gha/scripts/ci/gh-actions/run.sh test | |
| ####################################### | |
| # Docker container jobs | |
| ####################################### | |
| docker: | |
| needs: [format, git_checks] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| baseos: [ubuntu-bionic] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: ci-source | |
| - name: Re-configure docker daemon | |
| run: | | |
| sudo systemctl stop docker | |
| echo $'{\n "experimental": true\n}' | \ | |
| sudo tee /etc/docker/daemon.json | |
| sudo systemctl start docker | |
| - name: Build image | |
| run: | | |
| docker build \ | |
| --rm --squash \ | |
| -t ornladios/adios2:ci-tmp \ | |
| --build-arg baseos=${{ matrix.baseos }} \ | |
| --build-arg ci_source_dir=ci-source \ | |
| -f ci-source/scripts/ci/images/spack/Dockerfile \ | |
| . | |
| - name: Save image as a tar file | |
| run: | | |
| docker save -o ci-docker.tar ornladios/adios2:ci-tmp | |
| ls -lah ci-docker.tar | |
| - name: Upload | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| retention-days: 1 | |
| name: ci-docker ${{ matrix.baseos }} ${{ github.sha }} | |
| path: ci-docker.tar | |
| - name: Push image to Docker Hub | |
| if: github.event_name == 'push' | |
| env: | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| DOCKERHUB_PASSWORD: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| run: | | |
| target_tag="${GITHUB_REF##refs/heads/}-${{ matrix.baseos }}" | |
| docker tag \ | |
| ornladios/adios2:ci-tmp \ | |
| ornladios/adios2:${target_tag} | |
| docker login \ | |
| --username="${DOCKERHUB_USERNAME}" \ | |
| --password="${DOCKERHUB_PASSWORD}" | |
| docker push \ | |
| ornladios/adios2:${target_tag} | |
| ####################################### | |
| # Contract testing jobs | |
| ####################################### | |
| # These contract testing jobs use the container built in the previous | |
| # docker job and runs it in a way similar to how a typical GitHub | |
| # Actions container job does. Using the "messy" default shell for | |
| # run steps lets the steps be written as though they too were using a | |
| # standard container job. | |
| contract: | |
| needs: [format, git_checks, docker] | |
| if: needs.git_checks.outputs.num_code_changes > 0 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| code: [examples, lammps, tau] | |
| include: | |
| - code: examples | |
| - code: lammps | |
| repo: pnorbert/lammps | |
| ref: fix-deprecated-adios-init | |
| - code: tau | |
| defaults: | |
| run: | |
| shell: bash -c "docker exec adios2-ci bash --login -e $(echo {0} | sed 's|/home/runner/work|/__w|g')" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| if: ${{ matrix.repo != '' }} | |
| with: | |
| repository: ${{ matrix.repo }} | |
| ref: ${{ matrix.ref }} | |
| path: source | |
| - name: Download CI docker image | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: ci-docker ubuntu-bionic ${{ github.sha }} | |
| - name: Initialize containers | |
| shell: bash -e {0} | |
| run: | | |
| sudo chown 1000:1000 . | |
| docker load -i ci-docker.tar | |
| docker create \ | |
| --name adios2-ci --workdir /__w/ADIOS2/ADIOS2 \ | |
| -v "/home/runner/work":"/__w" \ | |
| --entrypoint "tail" ornladios/adios2:ci-tmp \ | |
| "-f" "/dev/null" | |
| docker start adios2-ci | |
| - name: Dependencies | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/depends.sh | |
| - name: Configure | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/config.sh | |
| - name: Build | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/build.sh | |
| - name: Install | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/install.sh | |
| - name: Test | |
| run: /opt/adios2/source/testing/contract/${{ matrix.code }}/test.sh | |
| ####################################### | |
| # Code analysis builds | |
| ####################################### | |
| analyze: | |
| needs: [format, git_checks] | |
| name: CodeQL | |
| runs-on: ubuntu-latest | |
| container: | |
| image: 'ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8' | |
| env: | |
| GH_YML_JOBNAME: ubuntu20.04-gcc8-serial-codeql | |
| GH_YML_BASE_OS: Linux | |
| GH_YML_MATRIX_OS: ubuntu20.04 | |
| GH_YML_MATRIX_COMPILER: gcc8 | |
| GH_YML_MATRIX_PARALLEL: serial | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| language: [ 'cpp' ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: gha | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| path: source | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v2 | |
| with: | |
| languages: ${{ matrix.language }} | |
| config: | | |
| paths: | |
| - source | |
| paths-ignore: | |
| - source/thirdparty | |
| - name: Setup | |
| run: gha/scripts/ci/gh-actions/linux-setup.sh | |
| - name: Update | |
| run: gha/scripts/ci/gh-actions/run.sh update | |
| - name: Configure | |
| run: gha/scripts/ci/gh-actions/run.sh configure | |
| - name: Build | |
| run: gha/scripts/ci/gh-actions/run.sh build | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v2 | |
| with: | |
| category: "/language:${{matrix.language}}" | |
| ####################################### | |
| # Workaround for skipping matrix jobs | |
| ####################################### | |
| build_and_test: | |
| needs: [linux_el8, linux_ubuntu, macos, docker, contract] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "All required jobs complete" |