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Implement bins_ptr() accessor for cooler::SingleCellFile() #298

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merged 2 commits into from
Oct 21, 2024
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Implement bins_ptr() accessor for cooler::SingleCellFile() #298

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3453147
Implement bins_ptr() accessor for cooler::SingleCellFile()
robomics Oct 21, 2024
1e20e03
Update docs
robomics Oct 21, 2024
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1 change: 1 addition & 0 deletions docs/cpp_api/cooler.rst
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Expand Up @@ -211,6 +211,7 @@ Single-cell Cooler (.scool)
.. cpp:function:: [[nodiscard]] std::string path() const;
.. cpp:function:: [[nodiscard]] auto chromosomes() const noexcept -> const Reference&;
.. cpp:function:: [[nodiscard]] auto bins() const noexcept -> const BinTable&;
.. cpp:function:: [[nodiscard]] auto bins_ptr() const noexcept -> std::shared_ptr<const BinTable>;
.. cpp:function:: [[nodiscard]] std::uint32_t resolution() const noexcept;

.. cpp:function:: [[nodiscard]] constexpr const phmap::btree_set<std::string>& cells() const noexcept;
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5 changes: 4 additions & 1 deletion src/libhictk/cooler/include/hictk/cooler/impl/singlecell_cooler_impl.hpp
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Expand Up @@ -192,7 +192,10 @@ inline SingleCellFile::operator bool() const noexcept { return !!_root_grp; }

inline std::string SingleCellFile::path() const { return (*_root_grp)().getFile().getName(); }

inline auto SingleCellFile::bins() const noexcept -> const BinTable& { return *_bins; }
inline auto SingleCellFile::bins() const noexcept -> const BinTable& { return *bins_ptr(); }
inline auto SingleCellFile::bins_ptr() const noexcept -> std::shared_ptr<const BinTable> {
return _bins;
}
inline std::uint32_t SingleCellFile::resolution() const noexcept { return bins().resolution(); }
inline auto SingleCellFile::chromosomes() const noexcept -> const Reference& {
return bins().chromosomes();
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1 change: 1 addition & 0 deletions src/libhictk/cooler/include/hictk/cooler/singlecell_cooler.hpp
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Expand Up @@ -85,6 +85,7 @@ class SingleCellFile {
[[nodiscard]] std::string path() const;
[[nodiscard]] auto chromosomes() const noexcept -> const Reference&;
[[nodiscard]] auto bins() const noexcept -> const BinTable&;
[[nodiscard]] auto bins_ptr() const noexcept -> std::shared_ptr<const BinTable>;
[[nodiscard]] std::uint32_t resolution() const noexcept;

[[nodiscard]] HighFive::File file_handle();
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