Releases: pinellolab/CRISPRme
v2.1.5
Summary
This release addresses several issues and brings enhancements to CRISPRme:
-
Bug Fixes:
- Resolved a bug that prevented alternative targets created by indels from being reported.
- Fixed an issue that blocked the tool from reporting all alternative alignments found for each site. -
Performance Improvements:
- Enhanced memory usage and reduced computational time by optimizing the target clustering procedure. -
New Features:
- Added support for GnomAD v4.0 VCF files.
What's Changed
Full Changelog: v2.1.4...v2.1.5
v2.1.4
Summary
This release enables to start CRISPRme's test via command line, providing users with a more streamlined and efficient testing pipeline. Additionally, this release resolves a bug encountered during indels analysis.
What's Changed
-
Fix Indels Analysis Bug: addresses a critical bug related to indels analysis (#49 ).
-
Introduce Test Functionality as Command Line: Users can now easily test CRISPRme's functionality via command line, streamlining the testing process and improving usability (#53).
Full Changelog: v2.1.3...v2.1.4
v2.1.3
Summary
This release enables to start CRISPRme's test via command line, providing users with a more streamlined and efficient testing pipeline. Additionally, this release resolves a bug encountered during indels analysis.
What's Changed
- Fix Indels Analysis Bug: addresses a critical bug related to indels analysis (#49 ).
- Introduce Test Functionality as Command Line: Users can now easily test CRISPRme's functionality via command line, streamlining the testing process and improving usability (#53).
- Fix error on conda build for crisprme test (#55 and #56)
Full Changelog: v2.1.2...v2.1.3
CRISPRme - v2.1.2
Summary
- custom targets sorting while merging close targets (command line options
--sorting-criteria-scoring
and--sorting-criteria
) - print current CRISPRme version from command line
- Fix bug on targets filtering by chromosome, when searching only the reference genome
What's Changed
Full Changelog: v2.1.1...v2.1.2
CRISPRme - v2.1.1
This release includes:
- Detailed error tracing (redirected to
log_verbose.txt
) - Stop CRISPRme execution when any step fails
- Resume CRISPRme analysis from the failed step (until off-targets search)
update to allow multi-thread post processing
- introduced user defined multi-thread count for many post-processing operations
- solved bug when no annotation file in input
bug fix and zenodo release update
fixed bug with bed type input
new release for zenodo stable
update to reflect website changes
fixed bug with PAM file path
update GUI
fixed bug in visualization
fixed stability of website
increased number of concurrent jobs
update names and download files available
zip files at execution time
release with fix and update gui
v2.0.7 fix bug in indels and snp analysis with misaligned targets
fetaure addition and graphical fix
Included option to check for base editing
fixed and updated GUI