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add workflow cli #274

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add workflow cli #274

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@cameronraysmith cameronraysmith commented Dec 1, 2023 •
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@cameronraysmith
fix(images): add diff static
f4e45c0 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix: add gitkeep to src folder
ca7c24c 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(gitignore): update hydra and flyte exclusions
d6bb660 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(flyte): add local cluster config file
c7bb6e5 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(flyte): add config file template
40d2e77 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(envrc): add direnv activation of dotenv
06f5c5e 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(make): load dotenv variables
f8a1b5c 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dotenv): add example .env file
18ec4c4 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(containerfiles): rename folder
a9d6956 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(containerfiles): use Dockerfile extension
dcc1dd9 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(make): add system/dev helpers
5b34a18 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat: add pkg dockerfile
032e152 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat: add gpu dockerfile
2627f94 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(make): add poetry dev commands
532bc50 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(pyproject): switch to poetry build
b71338c 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(dnadiffusion): use version from pyproject.toml
d32e9b5 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dnadiffusion): add dataclass auto-creation
158e633 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dnadiffusion): add constants
39c1627 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dnadiffusion): configure logging
ed818aa 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dnadiffusion): add hydra cli
cd3cca4 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(dnadiffusion): add example workflows
2a7e657 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(argo): add container build workflow
c176733 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(github): add environment setup action
2ba00c5 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(CI): add CI workflow
904fc8a 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(poetry): add lockfile
a4f05db 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(pandas): reenable >2 via flytekit fork
94db685 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(make): add CI targets
02d8a7e 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith added the enhancement New feature or request label Dec 1, 2023
@cameronraysmith cameronraysmith added this to the 0.1.0 milestone Dec 1, 2023
@cameronraysmith cameronraysmith self-assigned this Dec 1, 2023
@cameronraysmith
feat(make): export requirements.txt with poetry
2195be5 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(pyproject): additional conda-lock reqs from pypi
2853d96 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(conda-lock): not functional
b00c136 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(requirements): add poetry exported pip requirements
13272da 
primarily intended for use in container image builds
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(pkg.Dockerfile): separate dependency installation from package
0a57a9f 
increase likelihood of cache hits
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(gpu.Dockerfile): separate dependency installation from package
0dafac8 
increase likelihood of cache hits
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
test(lrwine): toggle parameters to trigger rebuild
c4be807 
check image cache status
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith marked this pull request as draft December 13, 2023 21:29
@cameronraysmith
fix(pyproject): adopt htseq 2.0.5
db4f299 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(poetry): update lock
66d663b 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(conda): update lock
e0713c3 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(devcontainer): remove make extension
a32159d 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(flake): reenable bioinformatics group
abee230 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(pyproject): uniform dep naming
2069869 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(requirements): update pip requirements
dc0c742 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@github-actions github-actions bot added the stale label Mar 7, 2024
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow and removed stale labels Mar 8, 2024
@github-actions github-actions bot added the stale label May 8, 2024
@github-actions github-actions bot closed this May 22, 2024
@cameronraysmith cameronraysmith mentioned this pull request Jul 30, 2024
Closed
@cameronraysmith
fix(vscode): update theme
dc636fe 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith force-pushed the 272-pl-cli branch 2 times, most recently from d44944e to dc636fe Compare July 30, 2024 18:43
@github-actions github-actions bot added the stale label Sep 29, 2024
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Reviewers

@ssenan ssenan Awaiting requested review from ssenan

@LucasSilvaFerreira LucasSilvaFerreira Awaiting requested review from LucasSilvaFerreira

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@cameronraysmith cameronraysmith

Labels
build Build System and Dependencies ci Continuous Integration dependencies Pull requests that update a dependency file enhancement New feature or request execute-workflow Control workflow execution on PRs github_actions Pull requests that update Github_actions code refactoring Refactoring skip-ci Skip CI workflow stale work-in-progress Work in progress that should not be auto-merged
Projects
DNA-diffusion
Status: In Progress
Milestone
0.1.0
Development

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support workflow execution from cli
1 participant
@cameronraysmith