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Add stardist fluorescence model #3
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- we have had stardist H&E for a while, which is pretrained for tissue images, this adds the variant of stardist pretrained on flourescence data from here: https://bioimage.io/#/?tags=stardist&id=10.5281%2Fzenodo.6348084 - TODO: DRY the code, by unifying preprocessing, prediction and loading from the two stardist implementations (majority is identical between the two)
- create abstract stardist class for the two concrete stardist variant classes, because most of the functionality is identical
The fluorescence model takes one channel inputs. You can find the example image at the zenodo repo, but don't download the UPDATE: I added the example image in I did make the mistake of setting |
Add stardist fluorescence model 2eb6af5
We have had stardist H&E for a while, which is pretrained for tissue images, this adds the variant of stardist pretrained on flourescence data from here: https://bioimage.io/#/?tags=stardist&id=10.5281%2Fzenodo.6348084