Update heteroskedastic GP notebook to v5 #701
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* First commit CFA and SEM Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * test pre-commit hooks Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * updated for pre-commit Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * updated git index Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * update with full run Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * add some text write up and a pair plot Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * update with full run and text Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * Run with explained variance calculations Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * Add sem structure section Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * full run with lavaan syntax noted Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * update with draft conclusion Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * tigher writing Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * tidying Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * emphasis on exchangeability Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * update plot sizes Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * add pearl reference Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> * updating with Chris's comments and better parameterisation Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com> --------- Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com>
* fix img path issues * fix img path issues * fix img path issues
* + added new notebook GLM-ordinal-features.ipynb
+ already complete and created in another env
* Created using Colab
* minor updates for latest seaborn
* Tweaks for collab and included authors
* added header
* + added new reference article and online
+ cited inside Notebook
+ adjusted errata
* + ran black again...
* + rep Burkner as B{\"u}rkner
* + maybe fixed readthedocs complaint pybtex.database.InvalidNameString: Too many commas in 'B{\\"u}rkner, P., & Charpentier, E.'
* + ran black-jupyter, let's see
* + another run of black-jupyter
* + installed local pymc_examples env
+ ran pre-commit in full
+ autocreated *.myst file
* + update tags
* + possibly persuaded the precommits to all pass
* + rerun on colab to confirm all good post new pre-commit process
* + okay, reran in colab again... lets see if this passes
* + added (again) the myst.md
* + minor updates post review
+ new work to positively include a coeff in mdlb for d450 = c4
* + reran precommit and readded myst.md
* + rerun localyl e2e
* + added myst.md again
* + reran again to ensure cell execution order even for markdown cells
* + reran again again to ensure order
* + minor update: forced addtional level c4 into d450 categorical feature
+ fixed a couple of typos
* + changed rating to intermediate
* Draft update of BNN notebook * Pre-commit fixes * Address reviewer comments * Additional edits * Removed bivariate example; updated formatting * Updated GEV * Changed pymc_experimental to pymc_extras --------- Co-authored-by: Chris Fonnesbeck <cfonnesbeck@phillies.com>
…ymc-devs#753) * + take a new up-to-date branch off master and dump in new NB missing values in covariates + update NB with various minor improvements following PR review in the old branch pymc-devs#722 + additional typos etc * + ran pre-commit autoupdate * + ran precommit on new NB, created myst file
* replaced all pymc potential with pymc censored * removed gumbel_sf function that is not being used * added rng to samplers * put back seeds for sampling data observations --------- Co-authored-by: Jonathan Dekermanjian <dekermanjian@Jonathans-MacBook-Pro.local>
* fixed bug introduced by rasterio update * added extra dependencies into metadata file * updated notebook metadata with dependencies --------- Co-authored-by: Jonathan Dekermanjian <dekermanjian@Jonathans-MacBook-Pro.local>
…it hooks (pymc-devs#719) * Fix Minibatch alignment in Bayesian Neural Network example * Run: pre-commit run all-files --------- Co-authored-by: Deepak CH <deepak.23BCS10092@ms.sst.scaler.com>
Signed-off-by: Nathaniel <NathanielF@users.noreply.github.com>
+ reformat CONTRIBUTING.md
…it hooks (pymc-devs#719) * Fix Minibatch alignment in Bayesian Neural Network example * Run: pre-commit run all-files --------- Co-authored-by: Deepak CH <deepak.23BCS10092@ms.sst.scaler.com>
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Sparse coregion example still not working! |
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Should this be marked as a draft? |
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Yes, its a mess. |
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Update code to PyMC v5
📚 Documentation preview 📚: https://pymc-examples--701.org.readthedocs.build/en/701/