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Dependency walk failed with 2 different version of same package #183

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gbmarc1 opened this issue Mar 3, 2023 · 22 comments · May be fixed by #286
Open

Dependency walk failed with 2 different version of same package #183

gbmarc1 opened this issue Mar 3, 2023 · 22 comments · May be fixed by #286

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@gbmarc1
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gbmarc1 commented Mar 3, 2023

The poetry lock command generated a lock file containing 2 different versions of the same package.

[[package]]
name = "grpcio"
version = "1.49.1
...
[[package]]
name = "grpcio"
version = "1.51.3"
...

This is due to the following dependency constraint in one of the package:

grpcio = [
    {version = ">=1.42.0", markers = "python_version >= \"3.10\" and sys_platform != \"darwin\""},
    {version = ">=1.42.0,<=1.49.1", markers = "python_version >= \"3.10\" and sys_platform == \"darwin\""},
]

The export command fails with Dependency walk failed at grpcio (>=1.42.0,<=1.49.1)

This happens because the first analyzed dependency choose the 1.51.3 version first. When the grpcio (>=1.42.0,<=1.49.1) dependency is analyzed (afterwards), the 1.49.1 version is being filtered out here.
@gbmarc1
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gbmarc1 commented Mar 3, 2023

Note:
As a workaround, I added an additional dependency grpcio<=1.49.1 such that 1.51.3 is not added to the .lock file. The export works fine in this case.

@gbmarc1 gbmarc1 mentioned this issue Mar 3, 2023
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@dimbleby dimbleby mentioned this issue May 26, 2023
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@SunnyR SunnyR mentioned this issue Jun 21, 2023
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@dimbleby dimbleby mentioned this issue Jul 2, 2023
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@develmusa
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develmusa commented Jul 20, 2023 •
edited
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The problem goes even further when there are two different versions of the same package required by a third one.

[[package]]
name = "packageA"
version = "1.0.0"

[[package]]
name = "packageA"
version = "2.0.0"

[[package]]
name = "packageB"
version = "1.0.0"

[package.dependencies]
packageA = "*"
[tool.poetry.dependencies]
packageA = [
    {version="1.0.0", markers = "platform_machine =='armv7l' and python_full_version == '3.8.2'"},
    {version="2.0.0", markers = "platform_machine !='armv7l' and python_full_version != '3.8.2'"}
]
packageB = {version="1.0.0"}

In this case we generate mutiple overlappingoverlapping_candidates

poetry-plugin-export/src/poetry_plugin_export/walker.py

Lines 230 to 232 in 2285341

# If we have more than one overlapping candidate, we've run into trouble.
if len(overlapping_candidates) > 1:
return None

@dimbleby dimbleby mentioned this issue Aug 2, 2023
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@radoering radoering mentioned this issue Oct 9, 2023
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@edgarrmondragon edgarrmondragon mentioned this issue Oct 9, 2023
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@ryancausey
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I just ran into this because botocore has different range requirements depending on the python version:

[[package]]
name = "botocore"
version = "1.31.62"
description = "Low-level, data-driven core of boto 3."
optional = false
python-versions = ">= 3.7"
files = [
    {file = "botocore-1.31.62-py3-none-any.whl", hash = "sha256:be792d806afc064694a2d0b9b25779f3ca0c1584b29a35ac32e67f0064ddb8b7"},
    {file = "botocore-1.31.62.tar.gz", hash = "sha256:272b78ac65256b6294cb9cdb0ac484d447ad3a85642e33cb6a3b1b8afee15a4c"},
]

[package.dependencies]
awscrt = {version = "0.16.26", optional = true, markers = "extra == \"crt\""}
jmespath = ">=0.7.1,<2.0.0"
python-dateutil = ">=2.1,<3.0.0"
urllib3 = [
    {version = ">=1.25.4,<1.27", markers = "python_version < \"3.10\""},
    {version = ">=1.25.4,<2.1", markers = "python_version >= \"3.10\""},
]

[[package]]
name = "urllib3"
version = "1.26.17"
description = "HTTP library with thread-safe connection pooling, file post, and more."
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
files = [
    {file = "urllib3-1.26.17-py2.py3-none-any.whl", hash = "sha256:94a757d178c9be92ef5539b8840d48dc9cf1b2709c9d6b588232a055c524458b"},
    {file = "urllib3-1.26.17.tar.gz", hash = "sha256:24d6a242c28d29af46c3fae832c36db3bbebcc533dd1bb549172cd739c82df21"},
]

[package.extras]
brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]

[[package]]
name = "urllib3"
version = "2.0.6"
description = "HTTP library with thread-safe connection pooling, file post, and more."
optional = false
python-versions = ">=3.7"
files = [
    {file = "urllib3-2.0.6-py3-none-any.whl", hash = "sha256:7a7c7003b000adf9e7ca2a377c9688bbc54ed41b985789ed576570342a375cd2"},
    {file = "urllib3-2.0.6.tar.gz", hash = "sha256:b19e1a85d206b56d7df1d5e683df4a7725252a964e3993648dd0fb5a1c157564"},
]

[package.extras]
brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"]
socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
zstd = ["zstandard (>=0.18.0)"]
$ poetry export --no-interaction     --no-ansi     --only main     --format requirements.txt

The `urllib3` package has the following compatible candidates `[Package('urllib3', '1.26.17')]`;  but, the exporter dependency walker previously elected `urllib3 (2.0.6)` which is not compatible with the dependency `urllib3 (>=1.25.4,<1.27)`. Please contribute to `poetry-plugin-export` to solve this problem.
$ poetry --version
Poetry (version 1.6.1)

@mswezey23
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mswezey23 commented Oct 9, 2023 •
edited
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Just hit this error today :( when introducing boto3

@ekaj2
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ekaj2 commented Oct 11, 2023

boto3 is a bad one! Happened to me today with urllib3 dependencies with this pyproject.toml:

[tool.poetry]
name = "..."
version = "0.1.0"
description = ""
authors = ["Jake Duth <...>"]
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.9"
requests = "^2.31.0"
nltk = "^3.8.1"
boto3 = "^1.28.62"

[tool.poetry.dev-dependencies]
rich = "^13.6.0"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

That creates this lock (with conflicting urllib3):

# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.

[[package]]
name = "boto3"
version = "1.28.62"
description = "The AWS SDK for Python"
optional = false
python-versions = ">= 3.7"
files = [
    {file = "boto3-1.28.62-py3-none-any.whl", hash = "sha256:0dfa2fc96ccafce4feb23044d6cba8b25075ad428a0c450d369d099c6a1059d2"},
    {file = "boto3-1.28.62.tar.gz", hash = "sha256:148eeba0f1867b3db5b3e5ae2997d75a94d03fad46171374a0819168c36f7ed0"},
]

[package.dependencies]
botocore = ">=1.31.62,<1.32.0"
jmespath = ">=0.7.1,<2.0.0"
s3transfer = ">=0.7.0,<0.8.0"

[package.extras]
crt = ["botocore[crt] (>=1.21.0,<2.0a0)"]

[[package]]
name = "botocore"
version = "1.31.62"
description = "Low-level, data-driven core of boto 3."
optional = false
python-versions = ">= 3.7"
files = [
    {file = "botocore-1.31.62-py3-none-any.whl", hash = "sha256:be792d806afc064694a2d0b9b25779f3ca0c1584b29a35ac32e67f0064ddb8b7"},
    {file = "botocore-1.31.62.tar.gz", hash = "sha256:272b78ac65256b6294cb9cdb0ac484d447ad3a85642e33cb6a3b1b8afee15a4c"},
]

[package.dependencies]
jmespath = ">=0.7.1,<2.0.0"
python-dateutil = ">=2.1,<3.0.0"
urllib3 = [
    {version = ">=1.25.4,<1.27", markers = "python_version < \"3.10\""},
    {version = ">=1.25.4,<2.1", markers = "python_version >= \"3.10\""},
]

[package.extras]
crt = ["awscrt (==0.16.26)"]

[[package]]
name = "certifi"
version = "2023.7.22"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
]

[[package]]
name = "charset-normalizer"
version = "3.3.0"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
optional = false
python-versions = ">=3.7.0"
files = [
    {file = "charset-normalizer-3.3.0.tar.gz", hash = "sha256:63563193aec44bce707e0c5ca64ff69fa72ed7cf34ce6e11d5127555756fd2f6"},
    {file = "charset_normalizer-3.3.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:effe5406c9bd748a871dbcaf3ac69167c38d72db8c9baf3ff954c344f31c4cbe"},
    {file = "charset_normalizer-3.3.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:4162918ef3098851fcd8a628bf9b6a98d10c380725df9e04caf5ca6dd48c847a"},
    {file = "charset_normalizer-3.3.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0570d21da019941634a531444364f2482e8db0b3425fcd5ac0c36565a64142c8"},
    {file = "charset_normalizer-3.3.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5707a746c6083a3a74b46b3a631d78d129edab06195a92a8ece755aac25a3f3d"},
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[metadata]
lock-version = "2.0"
python-versions = "^3.9"
content-hash = "3ef333b9b20fca0bdd43316f5e0243b8b677620a7cde1c48d36c90402b5597f2"

@ekaj2
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ekaj2 commented Oct 11, 2023

For the urllib3 workaround, you can add something like:

[tool.poetry.dependencies]
python = "^3.9"
requests = "^2.31.0"
nltk = "^3.8.1"
boto3 = "^1.28.62"
# workaround for: https://github.com/python-poetry/poetry-plugin-export/issues/183
urllib3 = ">=1.25.4,<1.27"

@jmuddle-via jmuddle-via mentioned this issue Oct 12, 2023
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@matthewarmand
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For the urllib3 workaround, you can add something like:

That seems to work, though the exact specification could change depending on your python version (boto says it's fine with urllib3 2.0.x for Python 3.10 and up)

So the export fails when there's 2 different versions of urllib3, but both versions are placed into the lockfile by Poetry's dependency resolution. Is that valid/intended? Is that a separate Poetry issue? If so, is it already being tracked on that project? It feels problematic to have 2 different versions of the same package locked and installed.

@radoering
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radoering commented Nov 3, 2023 •
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So the export fails when there's 2 different versions of urllib3, but both versions are placed into the lockfile by Poetry's dependency resolution. Is that valid/intended? Is that a separate Poetry issue? If so, is it already being tracked on that project? It feels problematic to have 2 different versions of the same package locked and installed.

It's intended and completely valid. The lockfile is environment-independent. This is purely an issue of poetry-plugin-export. Although two versions are locked only one is installed.

@matthewarmand
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Ah, got it, that makes sense. Thanks!

@NfNitLoop
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I'm currently working around this by doing:

poetry install --only main --sync
poetry run pip freeze > requirements.txt

poetry install --sync
poetry run pip freeze > dev_requirements.txt

I'm curious to hear how poetry-plugin-export's output would differ from this (if it were working).

@davidculley
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I have the same problem. @radoering

The Snowpark API of the cloud data warehouse Snowflake finally supports Python 3.11 since the recently released version 1.9.0 and I want to update Python from 3.10 to 3.11.

My pyproject.toml:

snowflake-snowpark-python = [
    { version = "^1.5.0", python = ">=3.9,<3.10", extras = [
        "pandas",
    ] },
    { version = "^1.5.1", python = ">=3.10,<3.11", extras = [
        "pandas",
    ] },
    { version = "^1.9.0", python = ">=3.11", extras = [
        "pandas",
    ] },
]

But the Snowpark API depends on cloudpickle.

My poetry.lock:

[[package]]
name = "snowflake-snowpark-python"
version = "1.10.0"
description = "Snowflake Snowpark for Python"
optional = false
python-versions = ">=3.8, <3.12"
files = [
    {file = "snowflake-snowpark-python-1.10.0.tar.gz", hash = "sha256:blablabla"},
    {file = "snowflake_snowpark_python-1.10.0-py3-none-any.whl", hash = "sha256:blablabla"},
]

[package.dependencies]
cloudpickle = [
    {version = ">=1.6.0,<=2.0.0", markers = "python_version < \"3.11\""},
    {version = "2.2.1", markers = "python_version ~= \"3.11\""},
]
[[package]]
name = "cloudpickle"
version = "2.0.0"
description = "Extended pickling support for Python objects"
optional = false
python-versions = ">=3.6"
files = [
    {file = "cloudpickle-2.0.0-py3-none-any.whl", hash = "sha256:blablabla"},
    {file = "cloudpickle-2.0.0.tar.gz", hash = "sha256:blablabla"},
]

[[package]]
name = "cloudpickle"
version = "2.2.1"
description = "Extended pickling support for Python objects"
optional = false
python-versions = ">=3.6"
files = [
    {file = "cloudpickle-2.2.1-py3-none-any.whl", hash = "sha256:blablabla"},
    {file = "cloudpickle-2.2.1.tar.gz", hash = "sha256:blablabla"},
]

When I run the pre-commit hook for the poetry export plugin, I always get the error message Dependency walk failed at cloudpickle.

It says furthermore:

The cloudpickle package has the following compatible candidates [Package('cloudpickle', '2.0.0')]; but, the exporter dependency walker previously elected cloudpickle (2.2.1) which is not compatible with the dependency cloudpickle (>=1.6.0,<=2.0.0). Please contribute to poetry-plugin-export to solve this problem.

@radoering
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I'm curious to hear how poetry-plugin-export's output would differ from this (if it were working).

Your approach creates a requirements.txt that's suitable for your current environment (Python version, platform, ...). (If you are lucky it will work for other environments, too.) poetry export creates a requirements.txt that's suitable for all possible environments (all Python versions according to your project's python requirement, all platforms, ...).

@valbertovc
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valbertovc commented Nov 10, 2023 •
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I am using Poetry 1.7.0 and Python 3.9 and I got this problem today with the following message:

The `urllib3` package has the following compatible candidates `[Package('urllib3', '1.26.18')]`;  
but, the exporter dependency walker previously elected `urllib3 (2.0.7)` 
which is not compatible with the dependency `urllib3 (>=1.25.4,<1.27)`. 
Please contribute to `poetry-plugin-export` to solve this problem.

This workaround works for me. Thanks @ekaj2!

For the urllib3 workaround, you can add something like:

[tool.poetry.dependencies]
python = "^3.9"
requests = "^2.31.0"
nltk = "^3.8.1"
boto3 = "^1.28.62"
# workaround for: https://github.com/python-poetry/poetry-plugin-export/issues/183
urllib3 = ">=1.25.4,<1.27"

@tasansal
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@radoering How would you recommend we solve this within the export plugin? Should there be a flag to only make the requirements.txt for the current environment?

The workaround of forcing older version of urllib3 for all downstream libraries is not a viable long-term solution, IMHO.

@couling
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couling commented Dec 1, 2023 •
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@tasansal I can't speak for others but the most pragmatic thing may be to have options here.

For context, we use poetry export in our org as part of our CI pipeline so that poetry is for development and build only. IMHO poetry is a great dev tool but a terrible distribution tool; we don't use poetry for installing onto end-user machines. We need a way to lock requirements without putting poetry on the target machine. So we poetry export them in the CI when we also poetry build.

If I may offer a few possible approaches:

  1. Error out (existing behaviour). There's a reasonable argument for leaving the default behaviour as is for backward compatibility.
  2. Offer option or make default to take the current host version / architecture. Not good for CI pipelines because you can't guarantee the build machine matches the target host to install onto. I can't personally see huge usefulness of this approach, but I don't know others' needs.
  3. Offer options to specify python version and architecture. This should be enough to ensure the split dependencies are resolved to single versions. That's more clunky but effective for CI because only the users know which architectures they work in.
  4. Offer an option to generate files on disk rather than stdout. This could generate as many files as necessary to go through all permutations caused through the lock file. Each file could be named with version ranges and architectures or "all" where the lock file didn't contain multiple versions of the same package.

From my point of view, only approaches 3 or 4 would fix our issue. It would be useful to be able to determine the list of permutations from a lock file.

@radoering
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How would you recommend we solve this within the export plugin?

Create a test case (probably in test_exporter.py), try to debug and fix it. (As far as I know, no one has yet seriously tried to solve the issue.)

Should there be a flag to only make the requirements.txt for the current environment?

I'm not even sure if that would make it easier at all. Apart from that, such a feature might make sense.

@couling
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couling commented Dec 1, 2023

Having said all that... why can poetry export not write out environment markers? Would that not allow exporting all permutations in one requirements.txt?

@radoering
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Having said all that... why can poetry export not write out environment markers? Would that not allow exporting all permutations in one requirements.txt?

That's exactly what poetry-plugin-export is doing. See the tests for example:

poetry-plugin-export/tests/test_exporter.py

Lines 2032 to 2040 in a2399dc

expected = f"""\
celery==5.1.2 ; {MARKER_PY36_ONLY}
celery==5.2.3 ; {MARKER_PY37}
click-didyoumean==0.0.3 ; {MARKER_PY36_PY362}
click-didyoumean==0.3.0 ; {MARKER_PY362_PY40}
click-plugins==1.1.1 ; {MARKER_PY36}
click==7.1.2 ; {MARKER_PY36_ONLY}
click==8.0.3 ; {MARKER_PY37}
"""

However, as this issue shows, there is a bug.

@tgaddair tgaddair mentioned this issue Dec 10, 2023
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This was referenced Dec 14, 2023
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aryarm added a commit to CAST-genomics/haptools that referenced this issue Dec 23, 2023
@aryarm
revert to 746555d
7f1125b 
at least until python-poetry/poetry-plugin-export#183 is resolved
@aryarm aryarm mentioned this issue Dec 23, 2023
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@aryarm aryarm mentioned this issue Jan 2, 2024
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@colindean
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I'm encountering this while trying to use sentence-transformers while having to manually specify the torch packages to use in order to get the CPU version of torch.

Minimal reproduction here: https://gist.github.com/colindean/2d9e042ae92a8df86bec4e83b4ce9cc4

@colindean colindean mentioned this issue Jan 3, 2024
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andrewbolster added a commit to andrewbolster/bolster that referenced this issue Feb 20, 2024
@andrewbolster
https://github.com/python-poetry/poetry-plugin-export/issues/183
2b91e2a
andrewbolster added a commit to andrewbolster/bolster that referenced this issue Feb 21, 2024
@andrewbolster
NI Water Quality Data (#1009)
c24aa6e 
* Hopefully resolves #1006
* resolved 2023/4 regressions in NI Water data return

Also resolved issues with....
* python-poetry/poetry-plugin-export#183
* python-poetry/poetry-plugin-export#239
* actions/upload-artifact#478
* actions/upload-artifact#478 (comment)

* after all that it was a collision between the pytest configurations in the ini and in pyproject.toml. pytests now runs locally
@beekill95 beekill95 mentioned this issue Mar 1, 2024
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@Alexander-Serov
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To get the discussion going, does anyone know what would be needed to make a fix? Which part of the code does the issue occur in exactly?

This was referenced Mar 15, 2024
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@Alexander-Serov
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Personally, I solve the issue for the moment by going to the Poetry.lock file manually and removing the offending versions. Perhaps, a simple workaround like this could be implemented for the moment, given that the issue has been open for a year? I admit that it doesn't solve all the problems (such as conflicting dependencies of the dependencies), but could provide a partial solution for some cases. What do you think?

@ohemorange ohemorange mentioned this issue Mar 29, 2024
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abompard added a commit to fedora-infra/noggin that referenced this issue Apr 15, 2024
@abompard
Workaround for the licenses check
87f1ee2 
There's an issue with the poetry dependency exporter when two different
versions of a dependency are in the selected set:
python-poetry/poetry-plugin-export#183

Signed-off-by: Aurélien Bompard <aurelien@bompard.org>
@radoering radoering linked a pull request May 20, 2024 that will close this issue
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@dakota002 dakota002 mentioned this issue Oct 21, 2024
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@cam8001
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cam8001 commented Oct 22, 2024

I worked around this on my present project by bumping the version of Python in pyproject.toml:

python = "^3.12"

Which after a poetry lock updates poetry.lock to:

[package.dependencies]
# other stuff omitted
urllib3 = {version = ">=1.25.4,<2.2.0 || >2.2.0,<3", markers = "python_version >= \"3.10\""

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