Fix 3051 #3052
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Fix 3051 #3052
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* inject study_type in EBI and improvements to current automatic processing pipeline (qiita-spots#3023) * inject study_type in ebi and improvements to current automatic proecssing pipeline * addressing @ElDeveloper comments * some general fixes/additions for next release (qiita-spots#3026) * some general fixes/additions for next release * adding test for not None job.release_validator_job * fix qiita-spots#2839 * fix qiita-spots#2868 (qiita-spots#3028) * fix qiita-spots#2868 * 2nd round * fix errors * more changes * fix errors * fix ProcessingJobTest * fix PY_PATCH * add missing TRN.add * encapsulated_query -> perform_as_transaction * fix qiita-spots#3022 (qiita-spots#3030) * fix qiita-spots#3022 * adding tests * fix qiita-spots#2320 (qiita-spots#3031) * fix qiita-spots#2320 * adding prints to debug * children -> 1 * APIArtifactHandlerTest -> APIArtifactHandlerTests * configure_biom * qdb.util.activate_or_update_plugins * improving code * almost there * add values.template * fix filepaths * filepaths -> files * fixing errors * add prep.artifact insertion * addressing @ElDeveloper comments * fix artifact_definition active command * != -> == * Added three tutorial sections to the Qiita documentation (qiita-spots#3032) * Added three tutorial sections to the Qiita documentation: 'Retrieving Public Data for Own Analysis' and 'Processing public data retrieved with redbiom' to the redbiom tab, and 'Statistical Analysis to Justify Clinical Trial Sample Size Tutorial' to the analyzing samples tab. * Update redbiom.rst * Update redbiom.rst * Update redbiom.rst * Further updates to redbiom.rst and the Stats tutorial. * update redbiom.rst * Finished proof-reading * Placed all three tutorials/sections together under Introduction to the download and analysis of public Qiita data * added a new introduction, with links to the three sections * Added figures to stats tutorial and contexts explanation * Added figures to stats tutorial and contexts explanation * Apply suggestions from code review [skip ci] Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucsd.edu> Co-authored-by: Antonio Gonzalez <antgonza@gmail.com> Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucsd.edu> * 092020 (qiita-spots#3033) * 092020 * connect artifact with job * rm INSERT qiita.artifact_processing_job * Apply suggestions from code review [skip ci] Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucsd.edu> Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucsd.edu> Co-authored-by: Daniel McDonald <danielmcdonald@ucsd.edu> Co-authored-by: Mirte Kuijpers <67341505+mcmk3@users.noreply.github.com> Co-authored-by: Yoshiki Vázquez Baeza <yoshiki@ucsd.edu>
adswafford
reviewed
Nov 20, 2020
| store the files!), generate a new key by running: | ||
| `ssh-keygen -t rsa -C "ssh test key" -f ~/.ssh/qiita-key -P ""`. Here is where you are | ||
| creating that key to your storage-shed. | ||
| #. Allow access using the new key to new connections (this also needs to be ran in the |
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"needs to be ran" -> "needs to be run"
adswafford
reviewed
Nov 20, 2020
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| To take advantage of this feature you need to: | ||
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| #. Prepare all the files you want to transfer in a single folder (or you can do this on |
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can do this on multiple folders -> can transfer multiple times from multiple folders into one study
adswafford
reviewed
Nov 20, 2020
| To take advantage of this feature you need to: | ||
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| #. Prepare all the files you want to transfer in a single folder (or you can do this on | ||
| multiple folders). Note that Qiita will only collect files with valid extensions; see the |
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extensions; _> extensions from only the top level directory;
adswafford
suggested changes
Nov 20, 2020
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No problem, thought it would be worth adding these changes (as they are documentation) for the next deployment. Thus, if the changes look good to you and you can merge them, that will be great! |
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Added the how-to for SCP and other common questions from the forum; it's just text so the review should be pretty quick.