Update R-devel URL for macOS #68
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I am not sure using the 4.0 release branch as the devel endpoint is actually correct, and this would require us to change it now, and then change it again in 3 weeks when R 4.0 is released... This is not a problem here so much, but for travis it is moreso, PRs are not always merged that often. |
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@jimhester agreed, but this is the best URL given by @s-u for the current macos devel version. Plus, I'm not sure the el-capitan build is updating anymore and, thus, testing on the old devel channel might be incorrect. |
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@s-u is there a more stable R-devel url that can be used similar to the form of: http://mac.r-project.org/el-capitan/R-devel/R-devel-el-capitan-signed.pkg |
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As @jimhester was pointing it, at this point we're in the somewhat unique time when we have That said, I have just kicked off an R-devel build for high sierra - it's not really useful at this point, but at least should provide something behind the R-devel link: |
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@s-u thank you so much! @jimhester switching the URL now. |
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@coatless like I said, i'd prefer if you added the 4.0 branch as that one is maintained and stable. That's what package authors should be targeting. You can keep the R-devel, but we advise against using the for quite some time. |
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Ok, I will merge this for now, and maybe we can add also add a 4.0 tag to point to the 4.0 branch until it is released. |
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FWIW I'd keep the 4.0 tag at that binary. I'd use exact versions for releases and keep 4.0 for the patched one which stays stable. |
Created both an introductory and a developer's notes vignette, updated README and docs with examples, added a second biocViews term, fixed some small bugs/typos. Related links (as many as I could remember): * https://rstd.io/tidytools19 * https://twitter.com/CVWickham * https://twitter.com/hadleywickham * https://www.rstudio.com/products/rstudio/download * https://comunidadbioinfo.github.io/post/building-tidy-tools-cdsb-runconf-2019/#.XrbLMxNKiu4 * http://bioconductor.org/ * https://lcolladotor.github.io/pkgs/ * https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016365.html * https://www.bioconductor.org/help/docker/ * https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016532.html * https://github.com/features/actions * https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016650.html * r-lib/actions#84 * r-lib/usethis#1108 * r-lib/styler#636 * Bioconductor/BiocCheck#57 * Bioconductor/bioconductor.org#54 * http://bioconductor.org/developers/how-to/coding-style/ * https://style.tidyverse.org/ * https://twitter.com/lorenzwalthert * https://twitter.com/mt_morgan * https://docs.travis-ci.com/user/languages/r/ * r-lib/pkgdown#1206 * r-lib/pkgdown#1230 * https://twitter.com/jimhester_ * https://www.jimhester.com/talk/2020-rsc-github-actions/ * https://github.com/Bioconductor/BBS * https://github.com/Bioconductor/packagebuilder * https://www.appveyor.com/ * r-hub/rhub#52 * r-hub/rhub#38 * https://www.tidyverse.org/blog/2020/04/usethis-1-6-0/ * https://github.com/r-lib/actions/tree/master/examples * https://yihui.org/en/2018/03/second-pull-request/ * https://github.com/r-lib/actions/blob/master/examples/check-standard.yaml * https://help.github.com/en/actions * https://ropenscilabs.github.io/actions_sandbox/ * https://twitter.com/seandavis12 * https://github.com/seandavi/BiocActions/blob/master/.github/workflows/main.yml * https://twitter.com/CSoneson * https://github.com/csoneson/dreval/blob/master/.github/workflows/R-CMD-check.yaml * https://bioc-community.herokuapp.com/ * https://github.com/leekgroup/derfinderPlot/blob/master/.github/workflows/check-bioc.yml * https://github.com/LieberInstitute/recount3/blob/master/.github/workflows/check-bioc.yml * https://github.com/hpages * r-lib/actions#68 * r-lib/actions#85 * https://twitter.com/opencpu * https://community.rstudio.com/u/const-ae * https://community.rstudio.com/t/compiler-support-fo-c-14-features-on-windows/57284/4 * r-lib/xml2#296 * r-lib/xml2#302 * https://github.com/r-lib/usethis/blob/master/.github/workflows/R-CMD-check.yaml * https://github.com/r-lib/usethis/commits/master/.github/workflows/R-CMD-check.yaml * https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016703.html * https://stat.ethz.ch/pipermail/bioc-devel/2020-April/thread.html * r-lib/remotes#296 * r-lib/actions#86 * r-lib/covr#427 * https://github.com/r-lib/actions/blob/master/examples/pr-commands.yaml * https://www.digitalocean.com/community/tutorials/how-to-install-git-on-ubuntu-18-04 * r-lib/actions#50 * actions/checkout#238 * https://github.com/rocker-org/rocker-versioned2/blob/master/dockerfiles/Dockerfile_rstudio_4.0.0-ubuntu18.04 * https://twitter.com/niteshturaga * https://twitter.com/cboettig * rocker-org/rocker-versioned#208 * https://github.saobby.my.eu.orgmunity/t5/GitHub-Actions/bd-p/actions * https://www.r-consortium.org/blog/2020/03/18/cdsb-diversity-and-outreach-hotspot-in-mexico * https://github.com/maxheld83 * r-lib/actions#87 * https://github.com/yutannihilation
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Similar to travis-ci/travis-build#1885
This just updates the R-devel URL to:
http://mac.r-project.org/high-sierra/R-4.0-branch/R-4.0-branch.pkg
I've opted not to change the gfortran install from homebrew, but I can add that as well.