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Updated deprecated functions #167

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merged 2 commits into from
Apr 7, 2024
Merged

Updated deprecated functions #167

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8e11879
Updated the now deprecated Series.replace() to Series.cat.rename_cate…
sjg2203 Apr 5, 2024
553814a
Updated freq_str in plot_spectrogram() as 's' of pd.Timedelta is now …
sjg2203 Apr 5, 2024
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2 changes: 1 addition & 1 deletion yasa/hypno.py
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Original file line number Diff line number Diff line change
Expand Up @@ -482,7 +482,7 @@ def as_int(self):
Name: Stage, dtype: int16
"""
# Return as int16 (-32768 to 32767) to reduce memory usage
return self.hypno.replace(self.mapping).astype(np.int16)
return self.hypno.cat.rename_categories(self.mapping).astype(np.int16)

def consolidate_stages(self, new_n_stages):
"""Reduce the number of stages in a hypnogram to match actigraphy or wearables.
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2 changes: 1 addition & 1 deletion yasa/plotting.py
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Expand Up @@ -331,7 +331,7 @@ def plot_spectrogram(

if hypno is not None:
# Convert sampling frequency to pandas timefrequency string (e.g., "30s")
freq_str = pd.tseries.frequencies.to_offset(pd.Timedelta(1 / sf, "S")).freqstr
freq_str = pd.tseries.frequencies.to_offset(pd.Timedelta(1 / sf, "s")).freqstr
# Create Hypnogram instance for plotting
hyp = Hypnogram(hypno_int_to_str(hypno), freq=freq_str)
hypnoplot_kwargs = dict(lw=1.5, fill_color=None)
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