stderr is not a pipe (Mac OS) #59

wlandau · 2020-08-14T16:37:35Z

I get a strange error when I try to run PhantomJS through webdriver on Mac OS. The same code seems to run without error on Linux. Related: rstudio/shinytest#259.

> packageDescription("webdriver")$GithubSHA1
[1] "7bec71e8e2d0300a29e48ff780bf1a223fdaff76"
> webdriver::install_phantomjs()
...
> rstudioapi::restartSession()
> webdriver::run_phantomjs()
Error in process_get_error_connection(self, private) : 
  stderr is not a pipe.
Type .Last.error.trace to see where the error occured
> .Last.error.trace

 Stack trace:

 1. webdriver::run_phantomjs()
 2. base:::stop("Cannot start phantom.js, or cannot connect to it",  ...
 3. base:::strwrap(ph$read_error_lines())
 4. ph$read_error_lines()
 5. processx:::process_read_error_lines(self, private, n)
 6. processx:::process_get_error_connection(self, private)
 7. throw(new_error("stderr is not a pipe."))

 x stderr is not a pipe. 

> sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.6

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] png_0.1-7            ps_1.3.4             withr_2.2.0          crayon_1.3.4         packrat_0.5.0        digest_0.6.25       
 [7] showimage_1.0.0      R6_2.4.1             jsonlite_1.7.0       evaluate_0.14        httr_1.4.2           debugme_1.1.0       
[13] rlang_0.4.7          webdriver_1.0.5.9000 curl_4.3             rstudioapi_0.11      callr_3.4.3          rmarkdown_2.3       
[19] tools_4.0.2          xfun_0.16            yaml_2.2.1           compiler_4.0.2       processx_3.4.3       base64enc_0.1-3     
[25] htmltools_0.5.0.9000 knitr_1.29

The text was updated successfully, but these errors were encountered:

gaborcsardi · 2020-08-14T16:57:05Z

I cannot reproduce this, can you pls use reprex::reprex() to create a reproducible example? Thanks!

gaborcsardi · 2020-08-14T17:00:55Z

It seems like an error happens when trying to report the original error :/, which is "Cannot start phantom.js, or cannot connect to it". So please check where phantom.js is installed, and that you can use it. You can use webdriver:::find_phantom() to find it.

wlandau · 2020-08-14T17:06:34Z

I did not use reprex before because of tidyverse/reprex#230, but here is one.

webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.

^{Created on 2020-08-14 by the reprex package (v0.3.0)}

webdriver:::find_phantom() shows "/Users/<CENSORED>/Library/Application Support/PhantomJS/phantomjs". I can run it in Terminal.

$ /Users/<CENSORED>/Library/Application\ Support/PhantomJS/phantomjs
phantomjs>

shirdekel · 2020-09-01T11:05:38Z

I also have this issue:

webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.

^{Created on 2020-09-01 by the reprex package (v0.3.0)}

Session info

devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value                       
#>  version  R version 4.0.2 (2020-06-22)
#>  os       macOS Mojave 10.14.6        
#>  system   x86_64, darwin17.0          
#>  ui       X11                         
#>  language (EN)                        
#>  collate  en_AU.UTF-8                 
#>  ctype    en_AU.UTF-8                 
#>  tz       Australia/Sydney            
#>  date     2020-09-01                  
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version date       lib source        
#>  assertthat    0.2.1   2019-03-21 [1] CRAN (R 4.0.0)
#>  backports     1.1.8   2020-06-17 [1] CRAN (R 4.0.0)
#>  base64enc     0.1-3   2015-07-28 [1] CRAN (R 4.0.0)
#>  callr         3.4.3   2020-03-28 [1] CRAN (R 4.0.0)
#>  cli           2.0.2   2020-02-28 [1] CRAN (R 4.0.0)
#>  crayon        1.3.4   2017-09-16 [1] CRAN (R 4.0.0)
#>  curl          4.3     2019-12-02 [1] CRAN (R 4.0.0)
#>  debugme       1.1.0   2017-10-22 [1] CRAN (R 4.0.2)
#>  desc          1.2.0   2018-05-01 [1] CRAN (R 4.0.0)
#>  devtools      2.3.0   2020-04-10 [1] CRAN (R 4.0.0)
#>  digest        0.6.25  2020-02-23 [1] CRAN (R 4.0.0)
#>  ellipsis      0.3.1   2020-05-15 [1] CRAN (R 4.0.0)
#>  evaluate      0.14    2019-05-28 [1] CRAN (R 4.0.0)
#>  fansi         0.4.1   2020-01-08 [1] CRAN (R 4.0.0)
#>  fs            1.5.0   2020-07-31 [1] CRAN (R 4.0.2)
#>  glue          1.4.1   2020-05-13 [1] CRAN (R 4.0.0)
#>  highr         0.8     2019-03-20 [1] CRAN (R 4.0.0)
#>  htmltools     0.5.0   2020-06-16 [1] CRAN (R 4.0.0)
#>  httr          1.4.2   2020-07-20 [1] CRAN (R 4.0.2)
#>  jsonlite      1.7.0   2020-06-25 [1] CRAN (R 4.0.1)
#>  knitr         1.29    2020-06-23 [1] CRAN (R 4.0.2)
#>  magrittr      1.5     2014-11-22 [1] CRAN (R 4.0.0)
#>  memoise       1.1.0   2017-04-21 [1] CRAN (R 4.0.0)
#>  pkgbuild      1.1.0   2020-07-13 [1] CRAN (R 4.0.2)
#>  pkgload       1.1.0   2020-05-29 [1] CRAN (R 4.0.0)
#>  png           0.1-7   2013-12-03 [1] CRAN (R 4.0.0)
#>  prettyunits   1.1.1   2020-01-24 [1] CRAN (R 4.0.0)
#>  processx      3.4.3   2020-07-05 [1] CRAN (R 4.0.2)
#>  ps            1.3.3   2020-05-08 [1] CRAN (R 4.0.0)
#>  R6            2.4.1   2019-11-12 [1] CRAN (R 4.0.0)
#>  remotes       2.1.1   2020-02-15 [1] CRAN (R 4.0.0)
#>  rlang         0.4.7   2020-07-09 [1] CRAN (R 4.0.1)
#>  rmarkdown     2.3     2020-06-18 [1] CRAN (R 4.0.0)
#>  rprojroot     1.3-2   2018-01-03 [1] CRAN (R 4.0.0)
#>  sessioninfo   1.1.1   2018-11-05 [1] CRAN (R 4.0.0)
#>  showimage     1.0.0   2018-01-24 [1] CRAN (R 4.0.2)
#>  stringi       1.4.6   2020-02-17 [1] CRAN (R 4.0.0)
#>  stringr       1.4.0   2019-02-10 [1] CRAN (R 4.0.0)
#>  testthat      2.3.2   2020-03-02 [1] CRAN (R 4.0.0)
#>  usethis       1.6.1   2020-04-29 [1] CRAN (R 4.0.0)
#>  webdriver     1.0.5   2018-04-11 [1] CRAN (R 4.0.2)
#>  withr         2.2.0   2020-04-20 [1] CRAN (R 4.0.0)
#>  xfun          0.16    2020-07-24 [1] CRAN (R 4.0.2)
#>  yaml          2.2.1   2020-02-01 [1] CRAN (R 4.0.0)
#> 
#> [1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library

shirdekel · 2020-09-01T23:39:23Z

But it's weird, because it does work sometimes. Here's a sample of 20:

webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25288.
#> 
#> $port
#> [1] 8431
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25290.
#> 
#> $port
#> [1] 7912
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25291.
#> 
#> $port
#> [1] 6088
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25292.
#> 
#> $port
#> [1] 6142
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25293.
#> 
#> $port
#> [1] 3271
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25294.
#> 
#> $port
#> [1] 4026
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25295.
#> 
#> $port
#> [1] 5722
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25297.
#> 
#> $port
#> [1] 3331
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25298.
#> 
#> $port
#> [1] 5912
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25299.
#> 
#> $port
#> [1] 5187
  webdriver::run_phantomjs()
#> $process
#> PROCESS 'phantomjs', running, pid 25300.
#> 
#> $port
#> [1] 5319
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.
  webdriver::run_phantomjs()
#> Error in process_get_error_connection(self, private): stderr is not a pipe.

^{Created on 2020-09-02 by the reprex package (v0.3.0)}

Session info

devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#>  setting  value                       
#>  version  R version 4.0.2 (2020-06-22)
#>  os       macOS Mojave 10.14.6        
#>  system   x86_64, darwin17.0          
#>  ui       X11                         
#>  language (EN)                        
#>  collate  en_AU.UTF-8                 
#>  ctype    en_AU.UTF-8                 
#>  tz       Australia/Sydney            
#>  date     2020-09-02                  
#> 
#> ─ Packages ───────────────────────────────────────────────────────────────────
#>  package     * version date       lib source        
#>  assertthat    0.2.1   2019-03-21 [1] CRAN (R 4.0.0)
#>  backports     1.1.8   2020-06-17 [1] CRAN (R 4.0.0)
#>  base64enc     0.1-3   2015-07-28 [1] CRAN (R 4.0.0)
#>  callr         3.4.3   2020-03-28 [1] CRAN (R 4.0.0)
#>  cli           2.0.2   2020-02-28 [1] CRAN (R 4.0.0)
#>  crayon        1.3.4   2017-09-16 [1] CRAN (R 4.0.0)
#>  curl          4.3     2019-12-02 [1] CRAN (R 4.0.0)
#>  debugme       1.1.0   2017-10-22 [1] CRAN (R 4.0.2)
#>  desc          1.2.0   2018-05-01 [1] CRAN (R 4.0.0)
#>  devtools      2.3.0   2020-04-10 [1] CRAN (R 4.0.0)
#>  digest        0.6.25  2020-02-23 [1] CRAN (R 4.0.0)
#>  ellipsis      0.3.1   2020-05-15 [1] CRAN (R 4.0.0)
#>  evaluate      0.14    2019-05-28 [1] CRAN (R 4.0.0)
#>  fansi         0.4.1   2020-01-08 [1] CRAN (R 4.0.0)
#>  fs            1.5.0   2020-07-31 [1] CRAN (R 4.0.2)
#>  glue          1.4.1   2020-05-13 [1] CRAN (R 4.0.0)
#>  highr         0.8     2019-03-20 [1] CRAN (R 4.0.0)
#>  htmltools     0.5.0   2020-06-16 [1] CRAN (R 4.0.0)
#>  httr          1.4.2   2020-07-20 [1] CRAN (R 4.0.2)
#>  jsonlite      1.7.0   2020-06-25 [1] CRAN (R 4.0.1)
#>  knitr         1.29    2020-06-23 [1] CRAN (R 4.0.2)
#>  magrittr      1.5     2014-11-22 [1] CRAN (R 4.0.0)
#>  memoise       1.1.0   2017-04-21 [1] CRAN (R 4.0.0)
#>  pkgbuild      1.1.0   2020-07-13 [1] CRAN (R 4.0.2)
#>  pkgload       1.1.0   2020-05-29 [1] CRAN (R 4.0.0)
#>  png           0.1-7   2013-12-03 [1] CRAN (R 4.0.0)
#>  prettyunits   1.1.1   2020-01-24 [1] CRAN (R 4.0.0)
#>  processx      3.4.3   2020-07-05 [1] CRAN (R 4.0.2)
#>  ps            1.3.3   2020-05-08 [1] CRAN (R 4.0.0)
#>  R6            2.4.1   2019-11-12 [1] CRAN (R 4.0.0)
#>  remotes       2.1.1   2020-02-15 [1] CRAN (R 4.0.0)
#>  rlang         0.4.7   2020-07-09 [1] CRAN (R 4.0.1)
#>  rmarkdown     2.3     2020-06-18 [1] CRAN (R 4.0.0)
#>  rprojroot     1.3-2   2018-01-03 [1] CRAN (R 4.0.0)
#>  sessioninfo   1.1.1   2018-11-05 [1] CRAN (R 4.0.0)
#>  showimage     1.0.0   2018-01-24 [1] CRAN (R 4.0.2)
#>  stringi       1.4.6   2020-02-17 [1] CRAN (R 4.0.0)
#>  stringr       1.4.0   2019-02-10 [1] CRAN (R 4.0.0)
#>  testthat      2.3.2   2020-03-02 [1] CRAN (R 4.0.0)
#>  usethis       1.6.1   2020-04-29 [1] CRAN (R 4.0.0)
#>  webdriver     1.0.5   2018-04-11 [1] CRAN (R 4.0.2)
#>  withr         2.2.0   2020-04-20 [1] CRAN (R 4.0.0)
#>  xfun          0.16    2020-07-24 [1] CRAN (R 4.0.2)
#>  yaml          2.2.1   2020-02-01 [1] CRAN (R 4.0.0)
#> 
#> [1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library

I thought the ports might be relevant, but I still got the error after rewriting the function with a fixed port that previously worked.

Will help with issues like #59.

gaborcsardi · 2020-09-05T12:32:34Z

@wlandau @shirdekel Can you try installing #60? (E.g. with remotes::install_github("rstudio/webdriver#60")). This will at least print the real output from phantom.js.

wlandau · 2020-09-05T18:28:33Z

Here is what run_phantomjs() shows after I install #60:

Error in webdriver::run_phantomjs() : 
  Cannot start phantom.js, or cannot connect to it. stdout + stderr:
>  [INFO  - 2020-09-05T18:26:46.690Z] GhostDriver - Main - running on port 5480

shirdekel · 2020-09-08T02:01:15Z

I get this:

Error in webdriver::run_phantomjs() : 
  Cannot start phantom.js, or cannot connect to it. stdout + stderr:
>

gaborcsardi · 2020-09-08T09:19:52Z

@shirdekel Does webdriver:::find_phantom() find phantom.js? Can you run it from the terminal?

@wlandau So it seems that phantom is running, actually. Do you have a local firewall that prevents connections?

wlandau · 2020-09-08T12:10:36Z

Yes, I do have a local firewall. It does apparently allow incoming connections from phantom, but I do not know about outgoing ones. My work's installation of Mac OS does not allow me to change these settings.

gaborcsardi · 2020-09-08T12:23:58Z

@wlandau R must be able to connect to phantom, on the port that is randomly selected. If it cannot connect, then there is no way to run webdriver, I am afraid.

You can try to run phantom from the terminal:

❯ "/Users/gaborcsardi/Library/Application Support/PhantomJS/phantomjs" --webdriver=
[INFO  - 2020-09-08T12:21:39.525Z] GhostDriver - Main - running on port 8910

and then connect to http://127.0.0.1:8910 from a browser, or from R:

❯ httr::GET("http://127.0.0.1:8910/")
Response [http://127.0.0.1:8910/]
  Date: 2020-09-08 13:22
  Status: 404
  Content-Type: text/plain
  Size: 467 B

If port 8910 works, then you can try with a port returned by webdriver:::random_port().

wlandau · 2020-09-08T18:18:53Z

I got a 503 from httr::GET("http://127.0.0.1:8910") with phantom running on port 8910 in a separate process. If that's because of the firewall, I guess it can't be helped in my case.

> httr::GET("http://127.0.0.1:8910/")
Response [http://40.26.201.184/]
  Date: 2020-09-08 14:10
  Status: 503
  Content-Type: text/html; charset=utf-8
  Size: 2.06 kB
<html><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<title>Website issue</title>
	<style type="text/css">
		* { margin:0; padding:0; }
		body { background:#dbe0e6; text-align:center; }
		#main_container  { margin:20px auto; width:500px; }
		#header { height:75px; border-bottom:1px solid #dbe0e6; }
		#content_container { float:left; margin-top:-5px; background:#ffffff; }
		#image { width:168px; padding:2px 2px 2px 2px; text-align:center; backgroun...
		#content { padding-top:15px; width:328px; float:right; text-align:left; }
...

What do you think about a slightly more verbose error message that mentions webdriver:::find_phantom() and possible firewall issues?

gaborcsardi · 2020-09-08T18:21:55Z

So is http://40.26.201.184 your proxy server? Maybe you can turn that off somehow? At least 127.0.0.1 should not go to a proxy.

Yeah, the error should be improved.

wlandau · 2020-09-08T18:34:30Z

It could be, I am not sure. But just knowing this is a firewall or proxy issue helps a ton and lets me find workarounds. Seems to me like an improved error message is sufficient to close the issue.

shirdekel · 2020-09-08T23:42:15Z

@shirdekel Does webdriver:::find_phantom() find phantom.js? Can you run it from the terminal?

Yes to both.

I followed your instructions for @wlandau and got the following:

"/Users/shirdekel/Library/Application Support/PhantomJS/phantomjs" --webdriver=
[INFO  - 2020-09-08T23:38:28.878Z] GhostDriver - Main - running on port 8910

httr::GET("http://127.0.0.1:8910/")
Response [http://127.0.0.1:8910/]
  Date: 2020-09-09 09:40
  Status: 404
  Content-Type: text/plain
  Size: 463 B

But I subsequently got the following error in terminal:

[ERROR - 2020-09-08T23:40:54.943Z] RouterReqHand - _handle.error - {"name":"Unknown Command","message":"{\"headers\":{\"Accept\":\"application/json, text/xml, application/xml, */*\",\"Accept-Encoding\":\"deflate, gzip\",\"Host\":\"127.0.0.1:8910\",\"User-Agent\":\"libcurl/7.54.0 r-curl/4.3 httr/1.4.2\"},\"httpVersion\":\"1.1\",\"method\":\"GET\",\"url\":\"/\",\"urlParsed\":{\"anchor\":\"\",\"query\":\"\",\"file\":\"\",\"directory\":\"/\",\"path\":\"/\",\"relative\":\"/\",\"port\":\"\",\"host\":\"\",\"password\":\"\",\"user\":\"\",\"userInfo\":\"\",\"authority\":\"\",\"protocol\":\"\",\"source\":\"/\",\"queryKey\":{},\"chunks\":[\"\"]}}","line":83,"sourceURL":"phantomjs://code/router_request_handler.js","stack":"_handle@phantomjs://code/router_request_handler.js:83:68"}

  phantomjs://platform/console++.js:263 in error

gaborcsardi · 2020-09-09T08:15:10Z

@shirdekel Try to install a newer/different phantomjs version. You can also install it with webdriver::install_phantomjs().

shirdekel · 2020-10-21T22:54:36Z

@shirdekel Try to install a newer/different phantomjs version. You can also install it with webdriver::install_phantomjs().

@gaborcsardi I did, and still am getting this error sometimes. It might be dependent on something in my R process because I have periods of time in which there is no error, and then suddenly I only get this error. After restarting R it works fine. I guess I'll keep monitoring it and update if I can identify a cause on my end.

PhilippPro · 2020-10-26T13:15:39Z

I have the same error and nothing worked so far, to solve it. :(

arnaud-feldmann · 2020-11-22T19:30:31Z

https://github.com/InseeFr/disaggR/runs/1439024221
I got the same problem on my CI, only with macos

PhilippPro · 2020-11-23T08:36:46Z

I got it solved. It had to do with the .Renviron file which set http-Proxys which were not suitable with phantomjs.

wch · 2020-12-18T21:43:23Z

@gaborcsardi So would it help to have random_port() check that a port is actually available before returning that value?

It seems like there could be two problems:

The port isn't available, so phantom won't start.
The port is blocked by a firewall, so even if phantom starts, the R process can't connect to it.

I guess it's not clear to me which problem people are running into here.

gaborcsardi · 2020-12-18T21:59:59Z

Having to choose a port is unfortunate, the OS should provide an available one, but apparently phantom does not support that. Nevertheless a port number clash should be quite rare.

I would guess that the proxy and the firewall issues are more common. We can probably try to detect them.
But for a quick improvement a better error message would help a lot I think.

wch · 2020-12-18T22:43:26Z

If I understand correctly, this error happens when there's a problem starting phantomjs, which is probably due to problems opening the port:

Error in process_get_error_connection(self, private): stderr is not a pipe.

This error would also indicate a problem starting, but we don't seem to actually see anyone reporting this error:

Failed to start phantomjs. Error: ....

This error would indicate that phantomjs started, but there was a problem connecting to it, likely due to a firewall or proxy:

Cannot start phantom.js, or cannot connect to it

Is that right?

If that's the correct, then maybe we should change the second message to:

phantomjs started, but cannot connect to it on port 1234

gaborcsardi added a commit that referenced this issue Sep 5, 2020

Print phantom stdout/err on startup error

a94f086

Will help with issues like #59.

gaborcsardi mentioned this issue Sep 5, 2020

Print phantom stdout/err on startup error #60

Merged

schloerke mentioned this issue Dec 2, 2020

app_path() should work with trailing / rstudio/shinytest#370

Merged

schloerke mentioned this issue Dec 18, 2020

Add devmode() features rstudio/shiny#3174

Merged

wch mentioned this issue Dec 18, 2020

Check that a port is available before using it #62

Merged

wch closed this as completed in #62 Dec 18, 2020

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stderr is not a pipe (Mac OS) #59

stderr is not a pipe (Mac OS) #59

wlandau commented Aug 14, 2020

gaborcsardi commented Aug 14, 2020

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wch commented Dec 18, 2020

stderr is not a pipe (Mac OS) #59

stderr is not a pipe (Mac OS) #59

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wlandau commented Aug 14, 2020

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