GitHub runner updates

.github/workflows/autodeploy.yml

@@ -23,11 +23,11 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # to fetch all branches and *tags* (needed to get version number correctly)
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         name: Install Python
         with:
           python-version: '3.10'
@@ -39,7 +39,7 @@ jobs:
           CIBW_BUILD_VERBOSITY: 1
           CIBW_BEFORE_ALL_LINUX: ./.github/ci-scripts/before_install.sh
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
           path: ./wheelhouse/*.whl
 
@@ -49,19 +49,19 @@ jobs:
     #if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')   # doesn't work -- try using tags: above
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # to fetch all branches and *tags* (needed to get version number correctly)
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         name: Install Python
         with:
           python-version: '3.10'
 
       - name: Build sdist
         run: python setup.py sdist
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
           path: dist/*.tar.gz
 
@@ -73,7 +73,7 @@ jobs:
     # alternatively, to publish when a GitHub Release is created, use the following rule:
     # if: github.event_name == 'release' && github.event.action == 'published'
     steps:
-      - uses: actions/download-artifact@v2
+      - uses: actions/download-artifact@v4
         with:
           name: artifact
           path: dist

.github/workflows/extras.yml

@@ -21,25 +21,25 @@ jobs:
     strategy:
       fail-fast: false # Finish all tests even if one fails
       matrix:
-        os: [ubuntu-20.04, windows-2019, macos-11]
+        os: [ubuntu-latest, windows-latest, macos-latest]
         python-version: [3.8, 3.9, '3.10', '3.11']
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up installation environment (Ubuntu or Windows)
-      if: ${{matrix.os == 'ubuntu-20.04' || matrix.os == 'windows-2019'}}
+      if: ${{matrix.os == 'ubuntu-latest' || matrix.os == 'windows-latest'}}
       run: |
         ./.github/ci-scripts/before_install.sh
     - name: Set up installation environment (MacOS)
-      if: ${{matrix.os == 'macos-11'}}
+      if: ${{matrix.os == 'macos-latest'}}
       run: |
         ./.github/ci-scripts/before_install_macos.sh
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
     - name: Cache pip packages
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: ~/.cache/pip
         key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}-${{ hashFiles('**/*requirements.txt') }}
@@ -51,17 +51,17 @@ jobs:
         python -m pip install -e .[testing]
         python setup.py build_ext --inplace
     - name: Run test_packages Ubuntu
-      if: ${{matrix.os == 'ubuntu-20.04'}}
+      if: ${{matrix.os == 'ubuntu-latest'}}
       run: |
         python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
         python -m pytest -v -n auto --dist loadscope --ignore=test/test_packages/mpi --ignore=test/test_packages/notebooks test/test_packages
     - name: Run test_packages Windows
-      if: ${{matrix.os == 'windows-2019'}}
+      if: ${{matrix.os == 'windows-latest'}}
       run: |
         python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
         python -m pytest -v -n auto --dist loadscope --ignore=test/test_packages/mpi --ignore=test/test_packages/notebooks test/test_packages
     - name: Run test_packages MacOS
-      if: ${{matrix.os == 'macos-11'}}
+      if: ${{matrix.os == 'macos-latest'}}
 
       run: |
         python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"

.github/workflows/main-mac.yml

@@ -0,0 +1,61 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Build and run tests (MacOS only, all Python versions)
+
+on:
+  push:
+    # Mac runners are expensive and oversubscribed. Only run on beta and master
+    branches: [ "beta", "master" ]
+  # Allow running manually from Actions tab
+  workflow_dispatch:
+
+env:
+  SKIP_DEAP: 1
+
+jobs:
+  build: # Main build + unit test check
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [macos-latest]
+        python-version: [3.8, 3.9, '3.10', '3.11']
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up installation environment (MacOS)
+      run: |
+        ./.github/ci-scripts/before_install_macos.sh
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Cache pip packages
+      uses: actions/cache@v3
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}-${{ hashFiles('**/*requirements.txt') }}
+    - name: Install package
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install wheel
+        python -m pip install flake8
+        python -m pip install -e .[testing]
+        python setup.py build_ext --inplace
+        # python -m pip freeze  # this isn't relevant anymore since pip install builds a wheel separately
+    - name: Lint with flake8
+      run: |
+        # Critical errors, exit on failure
+        flake8 . --count --show-source --statistics --config=.flake8-critical
+        # Standard PEP8, allowed to fail since exit-zero treats all errors as warnings
+        flake8 . --exit-zero --statistics
+    - name: Run unit tests MacOS  
+      if: ${{matrix.os == 'macos-latest'}}
+      run: |
+       python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
+       python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
+
+
+
+

.github/workflows/main-minimal.yml

@@ -0,0 +1,72 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Build and run tests (no MacOS, low/high Python versions only)
+
+on:
+  push:
+    # Intended to be fast checks on non-main branches
+    branches-ignore: [ "beta", "develop", "master" ]
+  # Hacky way to only run pull requests from forked repositories (assumes : is not used in branch names unless forked)
+  # https://github.saobby.my.eu.orgmunity/t/how-to-trigger-an-action-on-push-or-pull-request-but-not-both/16662/10
+  pull_request:
+    branches: [ "**:**" ]
+  # Allow running manually from Actions tab
+  workflow_dispatch:
+
+env:
+  SKIP_DEAP: 1
+
+jobs:
+  build: # Main build + unit test check
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest]
+        python-version: [3.8,'3.11']
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up installation environment (Ubuntu or Windows)
+      if: ${{matrix.os == 'ubuntu-latest' || matrix.os == 'windows-latest'}}
+      run: |
+        ./.github/ci-scripts/before_install.sh
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Cache pip packages
+      uses: actions/cache@v3
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}-${{ hashFiles('**/*requirements.txt') }}
+    - name: Install package
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install wheel
+        python -m pip install flake8
+        python -m pip install -e .[testing]
+        python setup.py build_ext --inplace
+        # python -m pip freeze  # this isn't relevant anymore since pip install builds a wheel separately
+    - name: Lint with flake8
+      if: ${{matrix.os != 'windows-latest'}}
+      run: |
+        # Critical errors, exit on failure
+        flake8 . --count --show-source --statistics --config=.flake8-critical
+        # Standard PEP8, allowed to fail since exit-zero treats all errors as warnings
+        flake8 . --exit-zero --statistics
+    - name: Run unit tests ubuntu
+      if: ${{matrix.os == 'ubuntu-latest'}}
+      run: |
+       python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
+       python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
+    - name: Run unit tests windows  
+      if: ${{matrix.os == 'windows-latest'}}
+      run: |
+       python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
+       python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
+
+
+
+

.github/workflows/main.yml

@@ -5,9 +5,7 @@ name: Build and run tests
 
 on:
   push:
-    branches-ignore: [ "beta" ]
-  # Hacky way to only run pull requests from forked repositories (assumes : is not used in branch names unless forked)
-  # https://github.saobby.my.eu.orgmunity/t/how-to-trigger-an-action-on-push-or-pull-request-but-not-both/16662/10
+    branches: [ "develop", "master" ]
   pull_request:
     branches: [ "**:**" ]
   # Allow running manually from Actions tab
@@ -22,25 +20,21 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-20.04, windows-2019, macos-11]
+        os: [ubuntu-latest, windows-latest]
         python-version: [3.8, 3.9, '3.10', '3.11']
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up installation environment (Ubuntu or Windows)
-      if: ${{matrix.os == 'ubuntu-20.04' || matrix.os == 'windows-2019'}}
+      if: ${{matrix.os == 'ubuntu-latest' || matrix.os == 'windows-latest'}}
       run: |
         ./.github/ci-scripts/before_install.sh
-    - name: Set up installation environment (MacOS)
-      if: ${{matrix.os == 'macos-11'}}
-      run: |
-        ./.github/ci-scripts/before_install_macos.sh
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
     - name: Cache pip packages
-      uses: actions/cache@v2
+      uses: actions/cache@v3
       with:
         path: ~/.cache/pip
         key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}-${{ hashFiles('**/*requirements.txt') }}
@@ -53,39 +47,34 @@ jobs:
         python setup.py build_ext --inplace
         # python -m pip freeze  # this isn't relevant anymore since pip install builds a wheel separately
     - name: Lint with flake8
-      if: ${{matrix.os != 'windows-2019'}}
+      if: ${{matrix.os != 'windows-latest'}}
       run: |
         # Critical errors, exit on failure
         flake8 . --count --show-source --statistics --config=.flake8-critical
         # Standard PEP8, allowed to fail since exit-zero treats all errors as warnings
         flake8 . --exit-zero --statistics
     - name: Run unit tests ubuntu
-      if: ${{matrix.os == 'ubuntu-20.04'}}
+      if: ${{matrix.os == 'ubuntu-latest'}}
       run: |
        python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
        python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
     - name: Run unit tests windows  
-      if: ${{matrix.os == 'windows-2019'}}
-      run: |
-       python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
-       python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
-    - name: Run unit tests MacOS  
-      if: ${{matrix.os == 'macos-11'}}
+      if: ${{matrix.os == 'windows-latest'}}
       run: |
        python -Ic "import pygsti; print(pygsti.__version__); print(pygsti.__path__)"
        python -m pytest -n auto --dist loadscope --cov=pygsti test/unit
 
 
   push: # Push to stable "beta" branch on successful build
 
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
 
     # Only run on "develop" branch if tests pass
     needs: build
     if: github.ref == 'refs/heads/develop' && github.event_name == 'push'
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
       with:
         fetch-depth: 0
         token: ${{ secrets.PYGSTI_TOKEN }}

.github/workflows/manualdeploy.yml

@@ -16,11 +16,11 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # to fetch all branches and *tags* (needed to get version number correctly)
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         name: Install Python
         with:
           python-version: '3.10'
@@ -32,7 +32,7 @@ jobs:
           CIBW_BUILD_VERBOSITY: 1
           CIBW_BEFORE_ALL_LINUX: ./.github/ci-scripts/before_install.sh
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
           path: ./wheelhouse/*.whl
 
@@ -41,27 +41,27 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # to fetch all branches and *tags* (needed to get version number correctly)
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         name: Install Python
         with:
           python-version: '3.10'
 
       - name: Build sdist
         run: python setup.py sdist
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
           path: dist/*.tar.gz
 
   upload_pypi:
     needs: [build_wheels, build_sdist]
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/download-artifact@v2
+      - uses: actions/download-artifact@v4
         with:
           name: artifact
           path: dist