Version 0.10.2

Bug fix: iva with the option --contigs had final contigs.fasta file missing

Version 0.10.1

Bug fix: iva_qc now writes file of contigs that did not hit the reference
Bug fix: string decode related erors for certain Python versions

Version 0.10.0

Bug fixes with PCR primer trimming.
If trimmomatic is used then by default trim reads using quality scores

Version 0.9.0

Assembly: trim adapters and PCR primers off contig ends after assembling.

QC: write FASTA of contigs that do not match the reference genome.

Version 0.8.0

Added option --pcr_primer to trim PCR primer sequences from reads before assembling.

Version 0.7.2

Bug fix, so that now works on Ubuntu 14.04 with latest pysam.

Version 0.7.1

Little bug fix with iva_qc stat ref_sequences_assembled_ok, now more stringent.
Update readme to just have installation instructions, as help etc is now on wiki pages.

Version 0.7.0

Add qc statistic assembly_sum_longest_match_each_segment

Version 0.6.0

Better at making new seeds.
Improved assembly algorithm.
Tidied up QC scripts.

Version 0.5.1

Tidy up QC contig layout plot, especially when lots of contigs are present