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MERSCOPE: don't try to load unexisting elements #87

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merged 5 commits into from
Nov 29, 2023

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quentinblampey
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Same as what was done for the Xenium reader: if the files that contain the points/shapes/table are not existing, they are not loaded (but a warning is shown).

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codecov-commenter commented Oct 20, 2023

Codecov Report

Merging #87 (f6c911b) into main (c4a32e5) will decrease coverage by 0.30%.
The diff coverage is 13.79%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #87      +/-   ##
==========================================
- Coverage   41.54%   41.24%   -0.30%     
==========================================
  Files          16       16              
  Lines         869      885      +16     
==========================================
+ Hits          361      365       +4     
- Misses        508      520      +12     
Files Coverage Δ
src/spatialdata_io/readers/merscope.py 25.00% <13.79%> (ø)

@giovp
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giovp commented Nov 29, 2023

@quentinblampey looks good, do you think we can merge it?

@quentinblampey
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Hello @giovp,
Yes, I think we can merge it, if it's ok for you!

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giovp commented Nov 29, 2023

yes, let's do it! Thank you @quentinblampey !

@giovp giovp merged commit 0aef170 into scverse:main Nov 29, 2023
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@LucaMarconato
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Nice work! A minor thing, please update the changelog when making a PR 😊 (gonna update it in main for this PR).

@quentinblampey
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Thanks @LucaMarconato, and sorry for forgetting, next time I will update the changelog!

lucas-diedrich pushed a commit to lucas-diedrich/spatialdata-io that referenced this pull request Nov 26, 2024
Co-authored-by: Blampey Quentin <quentin.blampey@centralesupelec.fr>
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4 participants