Copy in nf-test CI from nf-core/fetchngs #138
pinin4fjordsAnnotations
17 errors and 3 warnings
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Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
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Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
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Should run without failures:
Should run without failures#L1
Assertion failed:
assert workflow.success
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workflow false
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Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
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MULTIQC: FASTQC:
MULTIQC: FASTQC#L1
Assertion failed:
4 of 4 assertions failed
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MULTIQC: FASTQC and a config file:
MULTIQC: FASTQC and a config file#L1
Assertion failed:
4 of 4 assertions failed
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Should run without failures:
Should run without failures#L1
Assertion failed:
3 of 3 assertions failed
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Should run without failures:
Should run without failures#L1
java.lang.RuntimeException: Process has no output channels. process.out can not be used.
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Should run without failures:
Should run without failures#L1
Assertion failed:
2 of 2 assertions failed
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Should run without failures:
Should run without failures#L1
java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 0
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Should run without failures:
Should run without failures#L1
Assertion failed:
3 of 3 assertions failed
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Should run nothing:
Should run nothing#L1
Assertion failed:
assert workflow.success
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workflow false
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Should run help:
Should run help#L1
Assertion failed:
assert workflow.success
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workflow false
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Should run help with command:
Should run help with command#L1
Assertion failed:
assert workflow.success
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workflow false
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Should run help with extra text:
Should run help with extra text#L1
Assertion failed:
assert workflow.success
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workflow false
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Should validate params:
Should validate params#L1
Assertion failed:
assert workflow.stdout.any { it.contains('ERROR ~ ERROR: Validation of pipeline parameters failed!') }
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workflow | false
['N E X T F L O W ~ version 23.04.5', 'Launching `/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/497f872d00ae5bd9c43f47b9e7c34177/meta/mock.nf` [shrivelled_hopper] DSL2 - revision: 365f9ecc69']
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Should run without failures:
Should run without failures#L1
Assertion failed:
assert workflow.success
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workflow false
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Prettier
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-node@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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PythonBlack
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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EditorConfig
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-node@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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