Copy in nf-test CI from nf-core/fetchngs #138
GitHub Actions / JUnit Test Report
failed
May 2, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
Check failure on line 1 in Should run without failures
github-actions / JUnit Test Report
Should run without failures
Assertion failed:
3 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.03.0-edge
Launching `/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/meta/mock.nf` [loquacious_ride] DSL2 - revision: 1acf5b0a75
Downloading plugin nf-validation@1.1.3
WARN: The operator `first` is useless when applied to a value channel which returns a single value by definition
WARN: The operator `first` is useless when applied to a value channel which returns a single value by definition
Could not read parameters settings from JSON. java.nio.file.NoSuchFileException: /home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/meta/nextflow_schema.json
WARN:
Could not get workflow details for workflow 4Bi5xBK6E2Nbhj in workspace community/showcase:
↳ Status code 401 returned from request to https://api.tower.nf/orgs (authentication headers excluded)
WARN: Undocumented setting `docker.userEmulation` is not supported any more - please remove it from your config
[80/7ecab7] Submitted process > NF_AGGREGATE:SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)
ERROR ~ Error executing process > 'NF_AGGREGATE:SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)'
Caused by:
Process `NF_AGGREGATE:SEQERA_RUNS_DUMP (4Bi5xBK6E2Nbhj)` terminated with an error exit status (1)
Command executed:
tw \
\
--url=https://api.tower.nf \
--access-token=$TOWER_ACCESS_TOKEN \
runs \
dump \
-id=4Bi5xBK6E2Nbhj \
--workspace=community/showcase \
--output="4Bi5xBK6E2Nbhj.tar.gz" \
--add-task-logs --add-fusion-logs
mkdir -p 4Bi5xBK6E2Nbhj
tar \
-xvf \
4Bi5xBK6E2Nbhj.tar.gz \
-C 4Bi5xBK6E2Nbhj
cat <<-END_VERSIONS > versions.yml
"NF_AGGREGATE:SEQERA_RUNS_DUMP":
seqera-cli: $(echo $(NO_COLOR=true tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
END_VERSIONS
Command exit status:
1
Command output:
(empty)
Command error:
Unable to find image 'quay.io/seqeralabs/nf-aggregate:tower-cli-0.9.2--hdfd78af_1' locally
tower-cli-0.9.2--hdfd78af_1: Pulling from seqeralabs/nf-aggregate
ca7680d1025d: Pulling fs layer
4f4fb700ef54: Pulling fs layer
7bef15df9184: Pulling fs layer
ca7680d1025d: Verifying Checksum
ca7680d1025d: Download complete
4f4fb700ef54: Verifying Checksum
4f4fb700ef54: Download complete
ca7680d1025d: Pull complete
4f4fb700ef54: Pull complete
7bef15df9184: Download complete
7bef15df9184: Pull complete
Digest: sha256:ddf632d8110b22317ba4b6e043ae1570c492e55819d9a78333e642e1612be705
Status: Downloaded newer image for quay.io/seqeralabs/nf-aggregate:tower-cli-0.9.2--hdfd78af_1
/usr/local/bin/tw: line 6: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
ERROR: Unauthorized. Check your access token, workspace id and tower server url.
Work dir:
/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/work/80/7ecab70984cfbffeb7f6070b934981
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
-- Check '/home/runner/work/nf-aggregate/nf-aggregate/.nf-test/tests/c0ddcd2db0a903721258acc5d1602397/meta/nextflow.log' file for details
Execution cancelled -- Finishing pending tasks before exit
WARN: [NF_AGGREGATE:MULTIQC] Unable to resume cached task -- See log file for details
Nextflow stderr:
Loading