Software used in the BSc thesis Prediction of Cell Counts from DNA Methylation

Author: Simo Pähk

Supervisor: Ahto Salumets

Prerequisites

• Unix-like OS
• Miniconda
• Jupyter

Index

• preprocessing contains the scripts for obtaining methylation reports from sequence files
• ml contains the Jupyter notebooks for processing methylation and patient data, and building/evaluating machine learning models
• fig contains the figures generated from data
• data contains reports generated from sequencing data