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Rc2.3 calib #836

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merged 30 commits into from
Feb 14, 2025
Merged

Rc2.3 calib #836

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9b09854
Adding `continue_db` option and function to save to csv.
daniel-klein Jan 7, 2025
604dc8c
Sorting the saved csv file and added a top_k option
daniel-klein Jan 7, 2025
f0c8faa
Addressing No known mechanism for handling <class 'datetime.date'> → …
daniel-klein Jan 7, 2025
bd8e67c
Improved error handling if study is empty.
daniel-klein Jan 7, 2025
0f2753a
Fixing sign when no simulations meet the inclusion criteria
daniel-klein Jan 12, 2025
14d261d
Improving robustness against configurations
daniel-klein Jan 18, 2025
a6d2d0b
Plotting range improvement
daniel-klein Jan 18, 2025
ceb0480
Minor performance improvement
daniel-klein Jan 22, 2025
cfd082d
Better handling for plotting if all sims fail the inclusion test
daniel-klein Jan 22, 2025
e96df8a
Adding a workaround for rates as used in Normal components, but need …
daniel-klein Jan 23, 2025
3d62fc4
Adding a pruning function for parameter constraints
daniel-klein Jan 24, 2025
7cdb649
Moving away from beta as a ss.beta to a ss.rate_prob, for which we do…
daniel-klein Jan 24, 2025
641ffbd
Addressing an issue raised by @pausz regarding Normal component plott…
daniel-klein Jan 30, 2025
d886dcf
Merge branch 'rc2.3_calib' into rc2.3_calib_betafix
daniel-klein Jan 30, 2025
2bcae7d
Simplifying a_x calculation
daniel-klein Jan 31, 2025
fe6d9d6
Merge branch 'rc2.3_calib' into rc2.3_calib_betafix
daniel-klein Jan 31, 2025
9d3f7a0
* Adding a 'none' conformer that bypasses conforming - addresses #850
daniel-klein Feb 7, 2025
aac5cde
Default value for `combine_kwargs`
daniel-klein Feb 7, 2025
65eab9e
Minor bug fix
daniel-klein Feb 8, 2025
d085478
Changing Binomial component "p" calculation to MLE from Bayesian (Lap…
daniel-klein Feb 10, 2025
cd8330f
Nan to inf
daniel-klein Feb 10, 2025
12655a7
Avoid divide by zero, return inf
daniel-klein Feb 10, 2025
194982b
Resolving 0 * inf warning
daniel-klein Feb 10, 2025
3212987
Fixing div 0
daniel-klein Feb 10, 2025
f9a404e
Print a warning instead of asserting
daniel-klein Feb 13, 2025
1c3d8af
Updating a comment
daniel-klein Feb 14, 2025
feed375
Cleaning
daniel-klein Feb 14, 2025
ae5791e
No need for temp files
daniel-klein Feb 14, 2025
6a8a1d5
Code comment and whitespace
daniel-klein Feb 14, 2025
da1e3b3
Merge pull request #852 from starsimhub/rc2.3_calib_betafix
cliffckerr Feb 14, 2025
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2 changes: 1 addition & 1 deletion docs/tutorials/tut_calibration.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -350,7 +350,7 @@
"metadata": {},
"outputs": [],
"source": [
"g = calib.plot_final(); # Run the model for 10 replicates\n",
"g = calib.plot_final(); # Run the model for build_kw['n_reps'] = 15 replicates\n",
"for ax in g.axes: # Fix the date formatting\n",
" ax.xaxis.set_major_formatter(mdates.ConciseDateFormatter(ax.xaxis.get_major_locator()))"
]
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