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v1.2.0

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@jonathonl jonathonl released this 12 Jul 16:52
· 339 commits to master since this release
  • Adds missing sub-commands to manuals.
  • Adds manuals to packages - Fixes static linking of libc in cli packages.
  • Adds experimental concat sub-command to cli.
  • Adds 'sav head' and updates 'sav rehead'.
  • Adds --headers option to export and handles phasing header for VCF output.
  • Improves error handling in vcf reader.
  • Automatically appends .s1r extension to .sav files when running stat-index.
  • Adds manuals for CLI usage.
  • Uses compressed vectors for some conversions.
  • Fixes options not being passed to sav writer in export.
  • Copies some CLI options from import to export.
  • Fixes handling of special info fields in sav export.
  • Adds default info headers when export to sav format.
  • Adds experimental filter expressions.
  • Adds missing license notice.
  • Auto generates some property fields and changes read_if behavior.
  • Fixes PASS being removed in filter field.
  • Removes extra conditions for rounding in sav reader.