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Version 0.2.2
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@t-neumann t-neumann released this 03 Feb 12:01
· 136 commits to master since this release
v0.2.2
8ee28de

Changes:

  • Slamdunk supports now MultiQC <http://multiqc.info/>_ report creation
  • Default set to local mapping
  • Base-quality cutoff implemented throughout the entire slamdunk / alleyoop workflow
  • BAQ computation disabled for samtools mpileup
  • Dedup now supports selection of reads containing a defined # T>C conversions
  • All documentation moved to gh-pages branch for slicker repo
  • CPMs now normalized to filtered reads
  • Docker image now build automatically to head revision
  • Official webpage introduced instead of readthedocs.org hosting
  • Evaluation module for count files added to splash

Bugfixes:

  • PCAs for single sample working now
  • Dedup working again
  • Sample files may contain empty lines now
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