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Version 0.2.4
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@t-neumann t-neumann released this 24 Mar 11:41
· 119 commits to master since this release
v0.2.4
fc35e54

Changes:

  • License updated to AGPLv3
  • Deduplicator now only marks duplicates instead of removing them. Useful for deduplication QA like dupRadar. Allows for deduplication of T>C-fraction of reads only.
  • Singularity build-file branch added.

Bugfixes:

  • readInRegion fixed: Switched from fetch(region="chr:start-end" (1-based) to fetch(reference=chr, start=start, end=end) (0-based). Intervals close to the ends of a chromosome are now correctly handeled and not skipped.
  • Hotfix to fix executable permissions on some R plotting scripts
  • Fixed alleyoop collapse to ignore all MLE columns for now
  • R package dependencies fixed for IMP cluster
  • include_package_data removed for proper contrib import
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