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Version 0.3.0
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@t-neumann t-neumann released this 14 Jun 14:20
· 61 commits to master since this release
v0.3.0
b68beea

Changes:

  • Travis-CI testing added.
  • Automated versionable Docker container builds.
  • Static 2 T>C conversion cutoff multiTCSTringency parameter replaced by dynamic conversion-threshold parameter
  • Positional track module added to Alleyoop to produce genome-wide positional T>C conversion rate bigWigtracks
  • Read-separator module added to Alleyoop to separated T>C reads from non T>C reads into bam-files.
  • Docker base image set to ubuntu:18.04

Bugfixes:

  • Supplementary alignment flags unset in filtered bam
  • Fixed numpy version removed to satisfy pandas dependency
  • Minimum baseQ filter now inclusive which is the expected behaviour
  • Reference check for short chromosomes introduced
  • Backwards compatibility to pysam 0.8.3 introduced
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