[MRG] Using Mamba in Pipelines #1210
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Looks like I have to add mamba to PATH. |
kaushik94
changed the title
I think the problem is you're calling |
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Remember the |
Codecov Report
@@ Coverage Diff @@
## master #1210 +/- ##
==========================================
+ Coverage 77.71% 80.63% +2.91%
==========================================
Files 91 41 -50
Lines 5727 3424 -2303
==========================================
- Hits 4451 2761 -1690
+ Misses 1276 663 -613 Continue to review full report at Codecov.
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kaushik94
commented
Jul 1, 2020
kaushik94
changed the title
epassaro
reviewed
Jul 3, 2020
| displayName: Add conda to PATH | ||
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| - bash: | | ||
| sudo chown -R $USER $CONDA | ||
| # conda update -y conda | ||
| sudo chown -R $USER $CONDA |
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Split this step in two steps. The first one does the chown thing and must run exclusive for macOS. The second one does the update, but comment it out because we don't use that unless is necessary.
epassaro
reviewed
Jul 3, 2020
| displayName: "TARDIS test" | ||
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| - script: | |
epassaro
reviewed
Jul 3, 2020
| displayName: "Install TARDIS env" | ||
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| - bash: | | ||
| sh ci-helpers/fetch_reference_data.sh | ||
| # sh ci-helpers/fetch_reference_data.sh |
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Remove all the comments and the last cd line.
epassaro
reviewed
Jul 3, 2020
kaushik94
changed the title
epassaro
reviewed
Jul 3, 2020
| @@ -65,6 +65,7 @@ jobs: | |||
| git lfs pull --include="atom_data/chianti_He.h5" origin | |||
| git lfs pull --include="plasma_reference/" origin | |||
| git lfs pull --include="unit_test_data.h5" origin | |||
| git lfs pull --include="packet_unittest.h5" origin | |||
| echo MD5 `md5sum unit_test_data.h5` | |||
kaushik94
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kaushik94
changed the title
kaushik94
changed the title
kaushik94
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kaushik94
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Added a step to fail build on error as suggested by epassaro improved documentation to steps
kaushik94
changed the title
epassaro
approved these changes
Jul 17, 2020
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I made some changes to the fetch refdata bash script. Probably is the one we will keep, the other two files are not needed anymore. Keep only the changes in the YAML file in this PR. |
wkerzendorf
approved these changes
Jul 19, 2020
atharva-2001
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to atharva-2001/tardis
that referenced
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Oct 1, 2021
* testing mamba installation. Simply install mamba from conda and try to create env * added mamba after conda installation * check if mamba installation succesful * installing mamba before activating * fix syntax errors * Pin mamba to 0.4.0 and make pipelines exit on error with any bash command * move tardis_env.sh into pipelines file * fetch reference data fetching from bash scripts to azure pipelines file * fix syntax error * Added packet data * Adding variable shellopts to check * added shellopts=errexit so that build fails on non-zero error code * testing if pipeline fails * reverting changes, testing succesful * remove unused lines * testing, this should fail the pipeline * Made all single lines where necessary Added a step to fail build on error as suggested by epassaro improved documentation to steps * added back the git lfs pull code * removed git lfs codes * added git lfs to pipelines to make it faster
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Do not merge this PR, this is a WIP. Checking if mamba installation is successful on the Azure pipelines.