Skip to content

Issues: theislab/scvelo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

56 Open 746 Closed
56 Open 746 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

error in tl.paga: Invalid vertex ID
#1266 opened Jul 26, 2024 by sokratiag
2
NaN in velocity_umap
#1265 opened Jul 22, 2024 by wahdeeyau
scv.tl.paga bug Something isn't working
#1241 opened Apr 25, 2024 by hvgogogo
5
scv.pl.proportions() -- "axis 1 is out of bounds for array of dimension 1"
#1237 opened Apr 18, 2024 by Alvis-Jiang
an error in failing to save stream figures aftering installing some packages like "mpi4py petsc petsc4py" bug Something isn't working
#1236 opened Apr 14, 2024 by Shiywa
scv.tl.rank_velocity_genes() Doesn't Rank All Genes bug Something isn't working
#1207 opened Feb 23, 2024 by jwalewski
1
Add Subsetting by value enhancement
#1183 opened Feb 5, 2024 by jwalewski
Run scv.pl. velocity_ Embedding_ Stream error
#1179 opened Jan 16, 2024 by JWJ13164328557
1
A question about computing the latent time based on known gene expression enhancement
#1177 opened Jan 12, 2024 by HelloWorldLTY
Velocity scores clarification and possible enhancement enhancement
#1176 opened Jan 9, 2024 by jwalewski
Question about applying moments to 'total' layer enhancement
#1172 opened Dec 18, 2023 by lijc0804
velocity_pseudotime: from scv.tl.latent_time vs scv.tl.velocity_pseudotime #3588
#1168 opened Dec 10, 2023 by savagyan00
1
scv.pl.proportions - percentage labels in the bar chart do not match bars when the clusters start on 1 instead of 0. bug Something isn't working
#1092 opened Jun 27, 2023 by wendelljpereira
1
Possible bug in clean_obs_names function
#1029 opened Mar 28, 2023 by cs-tum
2
Implement ExpectationMaximizationModel.get_velocity enhancement
#1027 opened Mar 17, 2023 by WeilerP
Make SteadyStateInference equivalent to old API
#1024 opened Mar 17, 2023 by WeilerP
scvelo.read_load.merge ignores argument copy bug Something isn't working
#957 opened Nov 11, 2022 by WeilerP
@WeilerP
How could scVelo plot a vector graph in pdf fromat? enhancement plotting Plotting-related
#953 opened Nov 2, 2022 by vagabond12
Color specified as array fails in scv.pl.scatter bug Something isn't working
#892 opened Jun 26, 2022 by WeilerP
Error on using 'groupby' covariate with 'stochastic' mode within scv.tl.velocity() bug Something isn't working
#874 opened May 4, 2022 by JesseRop
4
Cutoff of cells in scatter plots when specifying custom figsize bug Something isn't working plotting Plotting-related
#766 opened Dec 2, 2021 by WeilerP
5
scv.pl.velocity_embedding_stream does not work with right_margin specified bug Something isn't working plotting Plotting-related
#765 opened Dec 2, 2021 by seigfried
2
Conflicting gene_count_corr results with scv.pp.normalize_per_cell and csr_vcorrcoef source function
#751 opened Nov 16, 2021 by thompjac24
Inconsistency in likelihood and loss calculations for dynamical model bug Something isn't working
#743 opened Nov 1, 2021 by paula-tataru
1
Error in loss function? bug Something isn't working
#742 opened Oct 29, 2021 by paula-tataru
ProTip! Type g i on any issue or pull request to go back to the issue listing page.