CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
Statistical classifier for immune repertoires
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Comparison of Adaptive Immune Receptor Repertoires
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
An R package to analyze single-cell V(D)J data
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
🐶 hlabud: HLA genotype analysis in R
Fast string distance computation in Python
WES HLA Typing based on multiple alternative tools
Highly informative TCR representation model
Standardise TR/MH data
Sequence-based prediction of peptide-TCR interactions using paired chain data
A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen
Comparison of gene usage in immune repertoires under different biological conditions
Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
LZ76 Graphs and Applications in Immunology
A pythonic library for analysing immunopeptidomic experiments
ESMDesign uses ESM-IF1 for the design of fragments within multichain proteins
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