🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

📚 Tools and databases for analyzing HLA and VDJ genes.

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

A user friendly RabbitMQ library written in Golang.

Curated list of awesome Token Curated Registry (TCR) resources.

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

A Parity Substrate runtime implementation of a simple Token Curated Registry (TCR)

Large language modeling applied to T-cell receptor (TCR) sequences.

TEIM: TCR-Epitope Interaction Modeling

Information and instructions for trying TCR workflow (test && commit || revert)

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

Line Bot TCR

Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

A react.js frontend for Substrate TCR runtime.

Get going with 'test && commit || revert' in seconds

code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)

Simple Contrastive Embedding of the Primary sequence of T cell Receptors