Multi-sample somatic variant caller

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

A pipeline for phylogenetic diversity analysis of GBIF-mediated data

GWA mapping with C. elegans

Nextflow DSL2 tRNA and ncRNA fragment identification pipeline for small RNA-seq data

Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance

Experiment illustrating how Nextflow can make biological pipelines reproducible

Statistical Analysis of multiplexed CRISPR / shRNA Screens using MAGeCK (deprecated)

EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.

🧠️🖥️2️⃣️0️⃣️0️⃣️1️⃣️💾️📜️ The sourceCode:Nextflow category for AI2001, containing Nextflow programming language datasets

Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.

CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

DNA methylation analysis pipeline for reduced representation bissulfite sequencing data

Pipeline for copy number variant calling from Whole Exome sequencing data using CODEX

sRNAflow – a tool for analysis of small RNA-seq data

Annotate CRISPR and shRNA screening libraries

Nextflow pipeline for Lexogen's QuantSeq (3'mRNA-Seq) analysis

A Collection of Nextflow Modules for Bayesian Structure Learning