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pull from lulab #1

Merged
merged 75 commits into from
May 2, 2024
Merged

pull from lulab #1

merged 75 commits into from
May 2, 2024

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ttngu207
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Tolga Dincer and others added 30 commits April 19, 2022 14:27
@tdincer
Merge pull request #2 from ttngu207/main
6cb6a38 
new activity
@tdincer
conflict resolve against Thinh PR
a20a6ec
@tdincer
draft utils
4a3a29f
@tdincer
new activity schema
32d4624
@tdincer
Merge branch 'datajoint:main' into new-activity
1c289ef
@tdincer
bug fix: key_source of Activity table
fd2b91e
@tdincer
add alternative fps definition based on NIS system
62fcc33
@tdincer
Merge branch 'main' of https://github.com/tdincer/element-calcium-ima…
4789008 
…ging into new-activity
@tdincer
remove unused schemas
9bbf38d
@tdincer
transfer utils from iub to element
68c5de5
@tdincer
relative import utils
2bf64d8
@tdincer
fix foreign key
1d954e8
@tdincer
optimize key_source
30577b6
@tdincer
add new table: SpikeStat
15e66a1
@tdincer
fix ActivityExtractionMethod definition
889ba5a
@tdincer
fix ActivityExtractionParamSet insert_new_params
b93db54
@tdincer
add docstring to SpikeStat
96a65ed
@tdincer
add explanation for lack dff calculation in new fissa
cd62a64
@tdincer
add explanation
116b9af
@tdincer
remove unused code
6c13b84
@tdincer
some clarifications in the docstrings
c7aea6f
@tdincer
various fixes
6279c21
@sidhulyalkar
Merge pull request #1 from tdincer/new-activity
bf21932
@kushalbakshi
Fix docs tutorials in dark mode
2de3ba9
@kushalbakshi @kabilar
Update docs/src/tutorials/index.md
45fbd33 
Co-authored-by: Kabilar Gunalan <kabilar@datajoint.com>
@kushalbakshi @kabilar
Update CHANGELOG.md
49013dc 
Co-authored-by: Kabilar Gunalan <kabilar@datajoint.com>
@kabilar
Merge pull request datajoint#132 from kushalbakshi/main
66e5944 
Fix docs tutorials in dark mode
@kushalbakshi
Merge branch 'main' of https://github.com/dj-sciops/lulab_element-cal…
aa1e53c 
…cium-imaging into lu-lab
@kushalbakshi
Add cannabinoid schema
a234189
@kushalbakshi
Add Z drift calculation schema
3aaf940
kushalbakshi and others added 28 commits September 27, 2023 15:44
@kushalbakshi
Update attribute exceeds_threshold -> bad_frames
14da7a5
@kushalbakshi
Modify attribute comment
a5a4e0e
@kushalbakshi
Update table ProcessingParamSet -> ProcessingTask for output dir
83efb3a
@kushalbakshi
Update "params" -> "z_params"
1b0b496
@kushalbakshi
Convert "output_dir" to path
e63e639
@kushalbakshi
Remove unlink step
e88313c
@kushalbakshi
Use PathLike object for symlink, not list
fdc7933
@kushalbakshi
Check if symlink already exists
4fddefa
@kushalbakshi
Symlink using file not folder
9b105b0
@kushalbakshi
check for symlink, append links to image_files
9162427
@kushalbakshi
Add image_files to else block
76056a8
@kushalbakshi
Debug symlink
d0e0104
@kushalbakshi
Debug output_dir error
225c663
@kushalbakshi
Debug symlink
2b51502
@kushalbakshi
Revert symlink to outbox
65623c2
@kushalbakshi
Symlink into first directory of full path
472a4f4
@kushalbakshi
Debug symlink
39a227b
@kushalbakshi
Specify path before saving
b69f0e8
@kushalbakshi
Fix typo
7a11b00
@kushalbakshi
Debug path error
11577ec
@kushalbakshi
Resolve path error in suite2p
57f613a
@kushalbakshi
Add print statement for debugging
e126088
@kushalbakshi
Black formatting
41b1d45
@kushalbakshi
Add error message for processing more than one set of bad frames
1aae2bb
@kushalbakshi
Updates from code review comments
3438f79
@ttngu207
Merge pull request #5 from kushalbakshi/lu-lab
b51c500 
Add symlink to `Processing` for `ZDriftMetrics`
@kushalbakshi
Fix: skip rigid/non-rigid motion correction - shifts not in suite2p o…
62cd1fe 
…utput
@ttngu207
Merge pull request #6 from kushalbakshi/lu-lab
1dcdc65 
Fix: skip rigid/non-rigid motion correction
@ttngu207 ttngu207 merged commit 512d479 into ttngu207:lulab May 2, 2024
5 of 6 checks passed
ttngu207 pushed a commit that referenced this pull request Jul 1, 2024
@kushalbakshi
Merge pull request #1 from ttngu207/per-plane-processing
288e447 
Per plane processing
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5 participants
@ttngu207 @tdincer @sidhulyalkar @kushalbakshi @kabilar