Code

pull from lulab#1

Code

Merged

ttngu207 merged 75 commits intottngu207:lulabttngu207/element-calcium-imaging:lulabfrom dj-sciops:maindj-sciops/lulab_element-calcium-imaging:mainCopy head branch name to clipboardMay 2, 2024

+604-3,603

Commits

Commits on Apr 19, 2022

• Merge pull request #2 from ttngu207/main

  Show description for 6cb6a38
  tdincer

  authored
  6cb6a38

• conflict resolve against Thinh PR

  tdincer

  committed
  a20a6ec

• draft utils

  tdincer

  committed
  4a3a29f

Commits on Apr 22, 2022

• new activity schema

  tdincer

  committed
  32d4624

Commits on May 6, 2022

• Merge branch 'datajoint:main' into new-activity

  tdincer

  authored
  1c289ef

• bug fix: key_source of Activity table

  tdincer

  committed
  fd2b91e

Commits on May 19, 2022

• add alternative fps definition based on NIS system

  tdincer

  committed
  62fcc33

Commits on Dec 10, 2022

• Merge branch 'main' of https://github.com/tdincer/element-calcium-imaging into new-activity

  tdincer

  committed
  4789008

• remove unused schemas

  tdincer

  committed
  9bbf38d

• transfer utils from iub to element

  tdincer

  committed
  68c5de5

• relative import utils

  tdincer

  committed
  2bf64d8

• fix foreign key

  tdincer

  committed
  1d954e8

• optimize key_source

  tdincer

  committed
  30577b6

• add new table: SpikeStat

  tdincer

  committed
  15e66a1

• fix ActivityExtractionMethod definition

  tdincer

  committed
  889ba5a

• fix ActivityExtractionParamSet insert_new_params

  tdincer

  committed
  b93db54

• add docstring to SpikeStat

  tdincer

  committed
  96a65ed

• add explanation for lack dff calculation in new fissa

  tdincer

  committed
  cd62a64

• add explanation

  tdincer

  committed
  116b9af

• remove unused code

  tdincer

  committed
  6c13b84

• some clarifications in the docstrings

  tdincer

  committed
  c7aea6f

Commits on Dec 12, 2022

• various fixes

  tdincer

  committed
  6279c21

• Merge pull request #1 from tdincer/new-activity

  sidhulyalkar

  authored
  bf21932

Commits on Apr 28, 2023

• Fix docs tutorials in dark mode

  kushalbakshi

  committed
  2de3ba9

• Update docs/src/tutorials/index.md

  Show description for 45fbd33
  

  kushalbakshi

  and

  kabilar

  authored
  45fbd33

• Update CHANGELOG.md

  Show description for 49013dc
  

  kushalbakshi

  and

  kabilar

  authored
  49013dc

• Merge pull request datajoint#132 from kushalbakshi/main

  Show description for 66e5944
  kabilar

  authored
  66e5944

Commits on May 2, 2023

• Merge branch 'main' of https://github.com/dj-sciops/lulab_element-calcium-imaging into lu-lab

  kushalbakshi

  committed
  aa1e53c

Commits on Jul 18, 2023

• Add cannabinoid schema

  kushalbakshi

  committed
  a234189

Commits on Jul 19, 2023

• Add Z drift calculation schema

  kushalbakshi

  committed
  3aaf940

• Fix formatting in ZDriftParamSet definition comment

  kushalbakshi

  committed
  e42e8fa

• Update foreign key reference

  kushalbakshi

  committed
  9edbb96

• Remove "processing_method" from ZDriftParamSet

  kushalbakshi

  committed
  ac0b484

• Modify key_source for ZDriftMetrics

  kushalbakshi

  committed
  5ca521e

• classmethod -> property for key_source

  kushalbakshi

  committed
  7ed4e90

• Add primary keys of key_source to table definition

  kushalbakshi

  committed
  6fa531c

Commits on Aug 1, 2023

• Add get_zstack_files function

  kushalbakshi

  committed
  c0a878e

• Bugfix in fetching image file path

  kushalbakshi

  committed
  c09b3e9

• Remove key_source property from ZDriftMetrics

  kushalbakshi

  committed
  6709903

Commits on Aug 10, 2023

• Edit comments and docstrings for z drift

  kushalbakshi

  committed
  ba7d1ac

• Merge pull request #3 from kushalbakshi/lu-lab

  Show description for 87f2733
  ttngu207

  authored
  87f2733

Commits on Aug 17, 2023

• Update ZDriftMetrics make to average z-scans

  kushalbakshi

  committed
  942c0b3

• Fix typo

  kushalbakshi

  committed
  ed4a6a8

• Update element_calcium_imaging/imaging_no_curation.py

  Show description for f4c4bcd
  

  kushalbakshi

  and

  ttngu207

  authored
  f4c4bcd

• Merge pull request #4 from kushalbakshi/lu-lab

  Show description for 94249dc
  ttngu207

  authored
  94249dc

Commits on Sep 26, 2023

• Add symlink to ZDriftMetrics

  kushalbakshi

  committed
  2130289

• Update attributes for ZDrift and Processing make

  kushalbakshi

  committed
  175a7e6

Commits on Sep 27, 2023

• Update attribute exceeds_threshold -> bad_frames

  kushalbakshi

  committed
  14da7a5

Commits on Oct 2, 2023

• Modify attribute comment

  kushalbakshi

  committed
  a5a4e0e

• Update table ProcessingParamSet -> ProcessingTask for output dir

  kushalbakshi

  committed
  83efb3a

• Update "params" -> "z_params"

  kushalbakshi

  committed
  1b0b496

• Convert "output_dir" to path

  kushalbakshi

  committed
  e63e639

• Remove unlink step

  kushalbakshi

  committed
  e88313c

• Use PathLike object for symlink, not list

  kushalbakshi

  committed
  fdc7933

• Check if symlink already exists

  kushalbakshi

  committed
  4fddefa

• Symlink using file not folder

  kushalbakshi

  committed
  9b105b0

• check for symlink, append links to image_files

  kushalbakshi

  committed
  9162427

• Add image_files to else block

  kushalbakshi

  committed
  76056a8

Commits on Oct 3, 2023

• Debug symlink

  kushalbakshi

  committed
  d0e0104

• Debug output_dir error

  kushalbakshi

  committed
  225c663

• Debug symlink

  kushalbakshi

  committed
  2b51502

• Revert symlink to outbox

  kushalbakshi

  committed
  65623c2

Commits on Oct 4, 2023

• Symlink into first directory of full path

  kushalbakshi

  committed
  472a4f4

• Debug symlink

  kushalbakshi

  committed
  39a227b

• Specify path before saving

  kushalbakshi

  committed
  b69f0e8

• Fix typo

  kushalbakshi

  committed
  7a11b00

• Debug path error

  kushalbakshi

  committed
  11577ec

• Resolve path error in suite2p

  kushalbakshi

  committed
  57f613a

• Add print statement for debugging

  kushalbakshi

  committed
  e126088

• Black formatting

  kushalbakshi

  committed
  41b1d45

Commits on Oct 5, 2023

• Add error message for processing more than one set of bad frames

  kushalbakshi

  committed
  1aae2bb

• Updates from code review comments

  kushalbakshi

  committed
  3438f79

Commits on Oct 6, 2023

• Merge pull request #5 from kushalbakshi/lu-lab

  Show description for b51c500
  ttngu207

  authored
  b51c500

Commits on Apr 30, 2024

• Fix: skip rigid/non-rigid motion correction - shifts not in suite2p output

  kushalbakshi

  committed
  62cd1fe

• Merge pull request #6 from kushalbakshi/lu-lab

  Show description for 1dcdc65
  ttngu207

  authored
  1dcdc65