BDCat Discovery page update and study release status

[SpencerAxelrod]

Link to Jira ticket if there is one:

Environments

BDCat preprod

Description of changes

• Add new portal discovery page detail view
• Add release status column

[PlanXCyborg]

gen3.biodatacatalyst.nhlbi.nih.gov/manifest.json

Deployment changes

• awshelper
  • Currently requires to manually update prisma api key in json format under this path in the adminvm (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • ~/Gen3Secrets/prisma/apikey.json (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • format has to be the following: (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • { (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • "AccessKeyID": "XXXX", (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • "SecretKey": "XXXX" (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • } (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • This PR extends kube-setup-hatchery to create a kubernetes secret with for prisma cloud credentials, and extending the hatchery deployment to look for this secret and use it, if it exists. (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
• fence
  • Configure the ALLOWED_DATA_UPLOAD_BUCKETS setting to allow users to upload to buckets other than DATA_UPLOAD_BUCKET (PXP-10361 Allow specifying the upload bucket fence#1051)
  • B/c the default session expiration changed from 30 minutes to 15 minutes to comply with FedRAMP, you MUST ensure that an instance that should comply with FedRAMP does NOT override this fence configuration (e.g. it should be 15 minutes) SESSION_TIMEOUT: 900 (feat(session): change default to 15 minutes [PPS-122] fence#1040)
• metadata
  • configuration files will need to be updated (PXP-8825 & BRH 206  metadata-service#65)
  • Database migration for MDS (PXP-10258 feat/alias metadata-service#63)
• portal
  • this change assumes WTS is already a core/central service. The dependency is hereby moved to the homepage (instead of the ./workspace page) (Centralize WTS refresh token initialization data-portal#1095)

Breaking changes

• arborist
  • The GET /auth/mapping endpoint does not accept username as a query parameter anymore. It only supports parsing the username from the provided JWT. To specify a username, use the POST /auth/mapping endpoint. (PXP-10229 Client auth mapping arborist#153)
• fence
  • Default session expiration changed from 30 minutes to 15 minutes to comply with FedRAMP (feat(session): change default to 15 minutes [PPS-122] fence#1040)
• indexd
  • Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access endpoints. these have existed (and been used) from the Fence microservice since last year. See cloud automation change here (Revert "Revert "fix(migrate): improve acl->authz migration, remove de… indexd#338)
  • Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access endpoints. these have existed (and been used) from the Fence microservice since last year. See cloud automation change here (fix(migrate): improve acl->authz migration, remove deprecated endpoints indexd#336)
• metadata
  • The configuration file is not compatible with the previous release. This is due to the new support for defining a schema, new configuration options, and changes to the adapters. (PXP-8825 & BRH 206  metadata-service#65)

[PlanXCyborg]

gen3.biodatacatalyst.nhlbi.nih.gov/manifest.json

Deployment changes

• awshelper
  • Currently requires to manually update prisma api key in json format under this path in the adminvm (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • ~/Gen3Secrets/prisma/apikey.json (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • format has to be the following: (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • { (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • "AccessKeyID": "XXXX", (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • "SecretKey": "XXXX" (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • } (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
  • This PR extends kube-setup-hatchery to create a kubernetes secret with for prisma cloud credentials, and extending the hatchery deployment to look for this secret and use it, if it exists. (BRH-301: Extend hatchery to launch prismacloud containers cloud-automation#2061)
• fence
  • Configure the ALLOWED_DATA_UPLOAD_BUCKETS setting to allow users to upload to buckets other than DATA_UPLOAD_BUCKET (PXP-10361 Allow specifying the upload bucket fence#1051)
  • B/c the default session expiration changed from 30 minutes to 15 minutes to comply with FedRAMP, you MUST ensure that an instance that should comply with FedRAMP does NOT override this fence configuration (e.g. it should be 15 minutes) SESSION_TIMEOUT: 900 (feat(session): change default to 15 minutes [PPS-122] fence#1040)
• metadata
  • configuration files will need to be updated (PXP-8825 & BRH 206  metadata-service#65)
  • Database migration for MDS (PXP-10258 feat/alias metadata-service#63)
• portal
  • this change assumes WTS is already a core/central service. The dependency is hereby moved to the homepage (instead of the ./workspace page) (Centralize WTS refresh token initialization data-portal#1095)

Breaking changes

• arborist
  • The GET /auth/mapping endpoint does not accept username as a query parameter anymore. It only supports parsing the username from the provided JWT. To specify a username, use the POST /auth/mapping endpoint. (PXP-10229 Client auth mapping arborist#153)
• fence
  • Default session expiration changed from 30 minutes to 15 minutes to comply with FedRAMP (feat(session): change default to 15 minutes [PPS-122] fence#1040)
• indexd
  • Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access endpoints. these have existed (and been used) from the Fence microservice since last year. See cloud automation change here (Revert "Revert "fix(migrate): improve acl->authz migration, remove de… indexd#338)
  • Ensure you are using Fence>=2021.10. Remove deprecated GA4GH access endpoints. these have existed (and been used) from the Fence microservice since last year. See cloud automation change here (fix(migrate): improve acl->authz migration, remove deprecated endpoints indexd#336)
• metadata
  • The configuration file is not compatible with the previous release. This is due to the new support for defining a schema, new configuration options, and changes to the adapters. (PXP-8825 & BRH 206  metadata-service#65)