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[develop] Configs for compiling and running online-cmaq on cheyenne. #783

Merged
merged 1 commit into from
Mar 15, 2023
Merged

[develop] Configs for compiling and running online-cmaq on cheyenne. #783

merged 1 commit into from
Mar 15, 2023

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padhrigmccarthy
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DESCRIPTION OF CHANGES:

UFS_UTILS config modules for Cheyenne HPC. These were developed in order to compile/run online-cmaq on Cheyenne with the new workflow. Tested successfully on cheyenne intel.

TESTS CONDUCTED:

I have compiled and run a version of the community config on Cheyenne, but I have not run formal tests from the test harness. Let me know if you would like me to contribute the config.yaml I developed for this purpose.

DEPENDENCIES:

PR with cheyenne configs for the ufs_weather_model

@GeorgeGayno-NOAA
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As a heads up for the repository managers, please open an issue first before starting any work.

@padhrigmccarthy
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As a heads up for the repository managers, please open an issue first before starting any work.

@GeorgeGayno-NOAA Apologies. I'm new to this, and have been working to get SRW online-cmaq running on Cheyenne. I didn't realize I'd be contributing to three different repos. Thanks for the guidance.

@padhrigmccarthy
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I'll need some assistance interpreting the failed check. It seems 100% of tests were successful, but the check failed anyway:

100% tests passed, 0 tests failed out of 29

Total Test time (real) = 19.69 sec

  • gcovr --root .. -v --html-details --exclude ../tests --exclude CMakeFiles --print-summary -o test-coverage.html
    Error: Process completed with exit code 1.

@GeorgeGayno-NOAA
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I'll need some assistance interpreting the failed check. It seems 100% of tests were successful, but the check failed anyway:

100% tests passed, 0 tests failed out of 29
Total Test time (real) = 19.69 sec

  • gcovr --root .. -v --html-details --exclude ../tests --exclude CMakeFiles --print-summary -o test-coverage.html
    Error: Process completed with exit code 1.

I don't know why it failed. I don't think it is anything you did. Let me rerun it. These tests break a lot. We are trying to make them more robust.

@GeorgeGayno-NOAA
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I'll need some assistance interpreting the failed check. It seems 100% of tests were successful, but the check failed anyway:

100% tests passed, 0 tests failed out of 29
Total Test time (real) = 19.69 sec

  • gcovr --root .. -v --html-details --exclude ../tests --exclude CMakeFiles --print-summary -o test-coverage.html
    Error: Process completed with exit code 1.

I don't know why it failed. I don't think it is anything you did. Let me rerun it. These tests break a lot. We are trying to make them more robust.

It looks like gcovr was updated yesterday: https://gcovr.com/en/stable/changelog.html#march-2023

And my workflows are breaking in the same way. So this won't hold up approval of your PRs.

@padhrigmccarthy
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It looks like gcovr was updated yesterday: https://gcovr.com/en/stable/changelog.html#march-2023

And my workflows are breaking in the same way. So this won't hold up approval of your PRs.

Thanks, George!

@GeorgeGayno-NOAA
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As a heads up for the repository managers, please open an issue first before starting any work.

@GeorgeGayno-NOAA Apologies. I'm new to this, and have been working to get SRW online-cmaq running on Cheyenne. I didn't realize I'd be contributing to three different repos. Thanks for the guidance.

No problem. See our wiki page for more details: https://github.com/ufs-community/UFS_UTILS/wiki/3.-Checking-out-code-and-making-changes

@GeorgeGayno-NOAA
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I don't have access to Cheyenne and we don't officially support that machine. So, I trust that your changes are working.

@JeffBeck-NOAA and @LarissaReames-NOAA do you work on Cheyenne?

@padhrigmccarthy
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I don't have access to Cheyenne and we don't officially support that machine. So, I trust that your changes are working.

@GeorgeGayno-NOAA Yes, we have several people here at RAL/NCAR using these configs on Cheyenne for online-cmaq. Trying to streamline our setup by contributing these configs.

@GeorgeGayno-NOAA GeorgeGayno-NOAA merged commit a767714 into ufs-community:develop Mar 15, 2023
AnnetteGibbs-NOAA added a commit to AnnetteGibbs-NOAA/UFS_UTILS that referenced this pull request Jul 3, 2023
@AnnetteGibbs-NOAA
Merge remote-tracking branch 'origin/develop' into feature/dyn_dng
2286a16 
* origin/develop:
  Update ccpp submodule (ufs-community#827)
  Change length of character variable "mosaic_name" in "make_solo_mosaic.c" (ufs-community#824)
  Update GDAS INIT utility for GFS COM reorganization (ufs-community#820)
  Add backup calculation for orography and mask generation (ufs-community#713)
  Improve repository build script (ufs-community#819)
  Use latest wgrib2 executable on Jet. (ufs-community#816)
  chgres_cube - Minor update for high-resolution grids . (ufs-community#814)
  Update PR template (ufs-community#813)
  global_cycle - Add soil moisture nudging for NoahMP option (ufs-community#809)
  Release v1.10.0 (ufs-community#807)
  Run sfc_climo_gen utility on Hera (ufs-community#791)
  Fix bug in chgres_cube subroutine search_many (ufs-community#808)
  sfc_climo_gen - Output fractions of each vegetation/soil type category (ufs-community#748)
  Replace w3nco library with w3emc (ufs-community#802)
  Fix Debug compilation (ufs-community#800)
  Update WCOSS2 build module to use new ESMF v8.4.1 library. (ufs-community#799)
  Update chgres_cube documentation for duplicate grib2 records (ufs-community#795)
  Use latest Cray modules on WCOSS2 (ufs-community#792)
  Remove checksum attribute from global_cycle restart files (ufs-community#794)
  Remove goto statements from chgres_cube (ufs-community#775)
  FVCOM_TOOLS - Remove dependency on module_nwp_base.f90 (ufs-community#790)
  Remove "gcovr" step from the 'developer' workflow (ufs-community#785)
  Update build module for Cheyenne (ufs-community#783)
  GDAS Init utility - consolidate the copy of coldstart files (ufs-community#773)
  Remove support for ODIN machine (ufs-community#782)
  Update GDAS INIT utility to optionally use fracoro data (ufs-community#741)
  Option to build only application specific utilities (e.g. GFS) (ufs-community#777)
  Use combined IP/IP2 library (ufs-community#695)
  Initial updates to global_cycle for Noah-MP land model (ufs-community#774)
  New resolution options for the cpld_gridgen utility (ufs-community#769)
  Use new EPIC-maintained hpc-stack on Jet  (ufs-community#771)
  Update GDAS initialization scripts for the new ENKF directory (ufs-community#764)
  Reduce memory usage in chgres_cube (ufs-community#766)
  Detect duplicate vertical levels in chgres_cube. (ufs-community#767)
  Point to new input orography directory. (ufs-community#758)
  Release version 1.9 (ufs-community#754)
  HAFSv1 grid nesting updates (ufs-community#752)
  Remove compiler warnings from chgres_cube (ufs-community#747)
  chgres_cube: Split input_data module into to 3 separate modules (ufs-community#744)
  More work on CI, checking with different versions of ESMF (ufs-community#742)
  Add processing of soil color to sfc_climo_gen (ufs-community#721)
  more work on CI - added Linux_versions workflow (ufs-community#739)
  Add TEST_FILE_DIR option to CMake build, where test data files can be found instead of using FTP.  (ufs-community#732)
  adding developer workflow (ufs-community#724)
  Update GDAS INIT utility for v16.3. (ufs-community#723)
  OROG_GSL - Remove negative bias in orographic asymmetery (OA) fields (ufs-community#718)
  Incorporate BNU soil type data (ufs-community#717)
  High-resolution MODIS and STATSGO veg/soil data. (ufs-community#703)
  Run WCOSS2 consistency tests under role account (ufs-community#711)
  Fix macOS CI workflow (ufs-community#715)
  Add utility codes to create BNU soil texture data (ufs-community#707)
  Update chgres_cube to output netcdf4 file. (ufs-community#704)
  Incorporate high-res global VIIRS vegetation data. (ufs-community#699)
  Run grid_gen consistency tests in parallel. (ufs-community#697)
  Fix error handling in "link_fixdirs.sh". Add -L to the copy command. (ufs-community#701)
  Update for new fixed data directory structure (ufs-community#688)
  Add WCOSS2 support for tests (ufs-community#693)
  Increase test data pull timeout (ufs-community#692)
  Option to install binaries to any directory. (ufs-community#685)
  Update global_cycle to use the latest CCPP version of sfcsub.F (ufs-community#671)
  Incorporate weight_gen program. (ufs-community#677)
  Add install of jpeg-turbo to macos workflows (ufs-community#684)
  Improve logic in regression test driver script (ufs-community#681)
  Release v1.8 (ufs-community#679)
  Update link_fixdirs.sh for new data directories (ufs-community#672)
  Update default ice climatology in ./ush/global_cycle.sh. (ufs-community#664)
  Remove all references to WCOSS 1 from UFS_UTILS (ufs-community#667)
  Update workflows to use latest macOS and ubuntu (ufs-community#675)
  Update GDAS Initialization utility for recent HPSS tarball name change (ufs-community#666)
  Port UFS_UTILS to WCOSS2 (ufs-community#642)
  Fix chgres_cube to process GEFS GRIB2 data (ufs-community#658)
  Update global_cycle_driver.sh for GFS OPS directory convention  (ufs-community#655)
  Update documentation for SRW App (ufs-community#656)
  New coupled model utility (ufs-community#647)
  Update support for S4 and enable regression testing (ufs-community#654)
  global_cycle - Link to CCPP version of sfcsub.F (ufs-community#636)
  Add processing of new global AFWA snow data to emcsfc_snow2mdl. (ufs-community#648)
  Update build module on Cheyenne (ufs-community#646)
  Move to Intel 2022 on Jet, Hera and Orion (ufs-community#650)
  Host doxygen documentation for multiple releases (ufs-community#644)
  Download unit test data as part of the CMake build (ufs-community#630)
  chgres_cube - Complete removal of wgrib2 library (ufs-community#641)
  Eliminate circular dependency in chgres_cube
  Update workflow files to pull netcdf-c library from GitHub
  chgres_cube - Remove the wgrib2 library from the GRIB2 data read routines.
  Undefined symbols on macOS with Intel compiler (ufs-community#628)
  Update FVCOM code to handle sub-domain restart files using multiple cores. (ufs-community#624)
  chgres_cube - Run routine 'convert_omega' on all tasks. (ufs-community#627)
  Use ESMF 8.2.0 library
  Automate update of consistency test baseline data. (ufs-community#603)
  Update workflow files to use newer versions of ESMF and NCEPLIBS. (ufs-community#617)
  Update build modules to be lua compliant (ufs-community#614)
  Allow FVCOM tools to Update Ice Surface Roughness Length (ufs-community#604)
  Update the requested memory in the Orion chgres_cube consistency test script (ufs-community#611)
  Use copy of grib_util under Jet role account. (ufs-community#608)
  Run consistency tests on Orion using role account (ufs-community#606)
  Run consistency tests on Hera using role account (ufs-community#605)
  Run consistency tests on Jet using role account. (ufs-community#607)
  Update more documentation after move to ufs-community (ufs-community#597)
  fvcom_tools - Add option to process 'cold' or 'warm' restart files (ufs-community#595)
  Update documentation after move to ufs-community (ufs-community#594)
  chgres_cube - Eliminate segmentation fault in input_data.F90 (ufs-community#585)
  Update to language of unit test README to match that in unit test.
  chgres_cube - Simplify surface processing using field bundles (ufs-community#572)
  Add compiler flags for GNU Fortran v10 or newer compilers. (ufs-community#583)
  Move verbose output from example unit test to be commented to streamline test output.
  Updates to test README to add instructions for use of example unit test.
  Add Findwgrib2.cmake (ufs-community#578)
  Added unit test to be used as an instructional example for new users.
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Reviewers

@GeorgeGayno-NOAA GeorgeGayno-NOAA GeorgeGayno-NOAA approved these changes

@JeffBeck-NOAA JeffBeck-NOAA Awaiting requested review from JeffBeck-NOAA

@LarissaReames-NOAA LarissaReames-NOAA Awaiting requested review from LarissaReames-NOAA

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@padhrigmccarthy @GeorgeGayno-NOAA