Repository should have a README.md #2

underwoo · 2019-10-18T15:31:10Z

To help users understand and navigate to the documentation in the wiki, it would be a good idea to have a README.md file. This file should briefly describe the project and have a link that points to the wiki for more documentation. The MOM6 readme file is a great example.

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…shed commit of the following: commit a9afb3607115ba35cc3c841bf48d410a048912c8 Merge: 6c9a70dc 2d13e99d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Nov 21 15:44:02 2019 -0700 Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai Initialize Leaf Area Index (LAI) from climatology and other submodule updates commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 15:43:07 2019 -0700 Update submodule pointers for ccpp/physics and FV3 commit 1653ff116ddca30b690a7375006139eab55237de Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 12:59:39 2019 -0700 Update submodule pointers for FV3 and ccpp/physics commit caed402a8f5a6a535e58284f63f678e692f341d9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:24:56 2019 -0700 Update submodule pointer for stochastic physics to point to the head of the master branch commit 38c66d903797bdc7dbbc99589badece212a63412 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:30 2019 -0700 Update FMS to the head of the GFS-FMS branch commit 29fbfcad795536eb763499ea98e9596d03c9d483 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:08 2019 -0700 Update submodule WW3 to point back to the NOAA-EMC version, set correct hash commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f Merge: 8b1bd280 fd8b7b48 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Nov 19 20:54:26 2019 -0700 Merge pull request #278 from climbfuji/add_gsd_sar_regression_test gsd/develop: add GSD SAR regression test commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 19 20:53:00 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 14:39:06 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: correct list of files to check commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 09:22:07 2019 -0700 Add regression test for GSD SAR commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284 Merge: c73f665b 13329bf9 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Nov 2 06:08:45 2019 +0900 Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g gsd/develop: update submodule pointer for ccpp-physics 2019/11/01 commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Nov 2 06:06:24 2019 +0900 Update submodule pointer for ccpp/physics commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5 Merge: fafa77ee 0f0778d4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Oct 28 12:54:28 2019 +0900 Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028 gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:39:54 2019 +0900 Update submodule pointer for ccpp/physics commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:33:09 2019 +0900 Add new regression test for GSD suite in DEBUG mode commit cc2706d9c35fbbd69048c244dc0997107b9a3c78 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 25 11:14:30 2019 +0900 Reduce timestep for regression tests using Thompson MP from 1200s to 600s commit fafa77eeae3696ff1fd9922b88becd3644b9dd55 Merge: f3d1f6d2 e6b48fbe Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Oct 24 11:00:48 2019 +0900 Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024 gsd/develop: update submodule pointer, remote theia commit e6b48fbea416696a5b23f6910df2697334c8d656 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Oct 24 10:57:13 2019 +0900 Update submodule pointer for ccpp/physics commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:20:15 2019 +0900 Update submodule pointer for ccpp-physics commit b583bd011b9e4139c3ff9efc7fa0240554d39a28 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:19:12 2019 +0900 tests/rt_ccpp_gsd.conf: remove theia commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c Merge: eac6d996 deec3095 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Oct 13 14:59:39 2019 +0900 Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1 gsd/develop: update submodule pointers for FMS and ccpp/physics commit deec3095e43efd3b1599052525a631faea17d7d0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 11 08:01:14 2019 +0900 Update submodule pointers for ccpp/physics and FMS commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f Merge: 49f6c48e e49075d7 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 14:21:16 2019 -0600 Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924 gsd/develop: update submodule pointers 2019/09/24 commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 14:19:43 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00 Merge: 5ea40b23 221bd404 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 12:56:42 2019 -0600 Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924 Update gsd/develop from gmtb/develop 2019/09/24 commit 221bd404496a25f133b1f4e7aaf068225dfd9446 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 12:51:44 2019 -0600 Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers commit e30fc6c67c3c98ceab5b0859fe47780de0859b91 Merge: e7691783 3042e609 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 10:53:31 2019 -0600 Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj gmtb/develop: cleanup work 2019/09/24 commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 09:52:12 2019 -0600 Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests commit e7691783692215fb713ba60ae2799f33a2147efe Merge: f1b4c707 d5051cd2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 10:16:50 2019 -0600 Merge pull request #254 from climbfuji/update_submodule_pointers_20190923 Update submodule pointers 2019/09/23 commit d5051cd2f28c7cb2df686db02664f98584c3fb70 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 23 10:15:15 2019 -0600 Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al. commit f1b4c70787e949ac3557a4f4f89e549574c4065c Merge: 4d78478e e86179ec Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 09:33:06 2019 -0600 Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920 gmtb/develop: update from master 2019/09/20, remove TRANSITION mode commit e86179ec519baba659f29c71ea119cf010e6020c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 19:59:53 2019 -0600 Update submodule pointer for ccpp/physics commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 08:55:40 2019 -0600 Remove TRANSITION mode commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0 Merge: c97254f5 31e98b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:41:07 2019 -0600 Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD commit c97254f5dc9e84281fa26098b603e3436cead0ac Merge: 4d78478e fadc8080 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:24:46 2019 -0600 Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351 Merge: af03bb30 4c1b7e7b Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 16:10:13 2019 -0600 Merge pull request #250 from climbfuji/update_submodule_pointers_20190919 Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19 commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 19 16:08:16 2019 -0600 Update submodule pointers for FV3, ccpp-physics, ccpp-framework commit af03bb30daac3be4b6aca41043612743f66d618c Merge: 80ff65a6 5aab0bee Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 14:40:18 2019 -0600 Merge pull request #249 from climbfuji/myj_with_dom_mods gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:54:29 2019 -0600 Update submodule pointer for FMS and ccpp/physics commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:49:09 2019 -0600 Bugfix for modulefiles/macosx.gnu/fv3 commit 04321dc32e522e2ece1ddd952c5771922b45ce6a Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:40:52 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit 2bc9874472eb499d7381a37782fbf3ac04af266b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:37:57 2019 -0600 ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 17:21:26 2019 -0600 Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf commit a747a0687153c1e69f8a741bcbdbc67eff766943 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:45 2019 -0600 Update submodule pointers for FV3, ccpp-framework, ccpp-physics commit 9091411f3fe01d44701545ed75d0b5fc90c313b0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:24 2019 -0600 Update ESMF version for macOS and linux platforms commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e Merge: 1aedd2bb 80ff65a6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:41:38 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:25:52 2019 -0600 tests/rt_ccpp_gmtb.conf: formatting changes commit 80ff65a69a144127015aa1703a73dbc123df008e Merge: a6b70173 4183ee57 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 16:23:34 2019 -0600 Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert gmtb/develop: metadata2html batch processing commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:10:38 2019 -0600 Remove redundant regression test configurations commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6 Merge: 26acc72b 3c961fa0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:08:26 2019 -0600 Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:01:40 2019 -0600 Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:00:17 2019 -0600 modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 15:59:30 2019 -0600 ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 13 14:52:04 2019 -0600 add noahmp tests to rt.conf and rt_ccpp_gmtb.conf commit db00f41e14c62aeadad503119e95f287562bd4d7 Merge: b34799b2 282ad6b6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 10:46:04 2019 -0600 Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912 commit a6b701733c4b1571a8a54c12db2142b3b5f9b815 Merge: 079b0b14 b34799b2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 09:37:14 2019 -0600 Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912 gmtb/develop: update tests/detect_machine.sh for Cheyenne commit b34799b26f6c956adc313027ffd6c51204e19acb Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 21:17:03 2019 -0600 tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 15:38:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment commit 92d6056d8b90d98e3ae2ffca275d5767f634b449 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:45:09 2019 -0600 Update submodule pointer for ccpp/framework commit 25486e833de3d752824ef391474f939daf370ca4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:44:55 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing commit d5dff46bb109e9a9c4707941013db1e47f221760 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:42:35 2019 -0600 remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml commit d114de7b13be53593146c39cacf939affda4c56f Merge: 2c378470 079b0b14 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:38:07 2019 -0600 Merge branch 'gmtb/develop' into noahmp commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2 Merge: c28e4020 20a8a674 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:44:52 2019 -0600 Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908 gmtb/develop: update submodule pointers 2019/09/08 commit 20a8a674fd496965423d07936039a355df1da0ff Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Sun Sep 8 20:42:53 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa Merge: 5b120105 69b55a7c Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:32:26 2019 -0600 Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904 Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability commit 2c378470a94f672d726a865ee67fc18e61e5e86c Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 6 15:13:34 2019 -0600 move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 5 21:48:25 2019 -0600 Update submodule pointer for ccpp/framework commit e67e618bb89dd396235e5dff186d11b458169b0b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 21:18:48 2019 -0600 Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre commit fadc80809693b39557f8ab4b75329bbf0106c519 Merge: 64f209ce 097468ca Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:45:51 2019 -0600 Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904 GitHub master: update submodule pointer for FV3 commit 097468ca99392eb208ee90039f3fc9b1e07ce903 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 16:44:20 2019 -0600 Update submodule pointer for FV3 commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d Merge: 45b389ae 8fe8d004 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:41:54 2019 -0600 Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904 Update GitHub master from Vlab master 2019/09/04 commit a105b2c92f91557b74cf439740628cfbddbc845c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:35 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:18 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F commit bd52519b589955ecf40e8e3dc2dfe6b087419210 Author: Grant Firl <grantf@ucar.edu> Date: Wed Sep 4 13:36:21 2019 -0600 add noahmp-specific rt.conf commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit da04e9ae8ecd7448732903b138ae29a675509b37 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:04:02 2019 -0600 ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:00:34 2019 -0600 ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:57:18 2019 -0600 Update submodule pointers for ccpp/framework and ccpp/physics commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2 Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:11:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme commit 79e5cd20c3b40effb990573a013e040b03ccb08b Merge: b9e05586 5ea40b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 09:18:44 2019 -0600 Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit b9e05586d33eac6902fb3e64d7646489c3b25fe1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:22:02 2019 -0600 modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set commit ceef678c966308e22ba2d08fd26a6526e6f4064b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:18:39 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary commit 0aafc0a34ed6649d8e54d058f96e83712162bbda Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:08:02 2019 -0600 update SDF using noahmp commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7 Merge: 235b712b 5b120105 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:06:00 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 10 08:05:30 2019 -0600 compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test commit bf8c2ded4b6779c9e1446507057f38a384b98167 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:33:37 2019 -0600 parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test commit 85b7a7a2c32a19971ac89255f9b9d595829902a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:31:48 2019 -0600 ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files commit d33df0427b1d6df35ff92edcab2e152d08499f15 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:30:55 2019 -0600 Add new submodule stochastic_physics, located in directory with same name commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15 Merge: 2483ed32 5b120105 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 09:22:32 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b Merge: 0ab90a12 fd7d0f1e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 09:19:54 2019 -0600 Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830 gmtb/develop: update from master 2019/08/30 commit 2483ed324e53de72fa67de24cb1d04d492b1c862 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:31:04 2019 -0600 ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile commit 45b389ae0e2fea91bb71edcceef481601827a5c5 Merge: 257f2a2e ce0c61f6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 08:23:51 2019 -0600 Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903 master: update submodule pointers for FV3, NEMS, WW3 commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:22:21 2019 -0600 Update submodule pointers for FV3, NEMS, WW3 commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b Merge: a1a54d1f 95583de5 Author: Laurie Carson <carson@ucar.edu> Date: Mon Sep 2 14:15:08 2019 -0600 Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830 Update GitHub NCAR master from Vlab master commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:43:28 2019 -0600 Update submodule pointer for ccpp-physics commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit 50962a88c93b90930d747e1e007f10c21b042fdb Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:33:53 2019 -0600 Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer commit 872693bea7e160edb478b05cfb68e96e3671ec8c Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 95583de5ce6c4cbb83abe35b969476ba88628cca Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 11:29:32 2019 -0600 Add default branch develop for WW3 and update submodule pointer commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855 Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 100dc801cb2901618f778720c6ad4426070ce4c7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 10:17:47 2019 -0600 Update .gitmodules so that WW3 points to the NCAR repository commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0 Merge: cee7b3fe b77f1471 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:42:51 2019 -0600 Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit b77f14719ac17b564f85d69383c99b8b161de817 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 07:40:55 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a Merge: f4671a1c d02d0c16 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:39:01 2019 -0600 Merge pull request #234 from climbfuji/bugfix_rt_conf gmtb/develop: bugfix for rt.conf commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52 Merge: 8a1e235d ed0c436a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 15:32:08 2019 -0600 Merge pull request #236 from grantfirl/master add Julie as codeowner commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3 Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 15:00:06 2019 -0600 add Julie as codeowner commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb Merge: ea22d467 a667940f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 14:58:30 2019 -0600 Merge pull request #235 from grantfirl/gmtb/develop add Julie as codeowner commit a667940f9cfff12e41cb5134f86e66babc76081f Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 14:52:42 2019 -0600 add Julie as codeowner commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:47 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 65238966d6c574b314bc1b0e487e59f78d9b5552 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:02 2019 -0600 tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd commit 282ad6b657ff250eefba8092975b484681479d8a Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:53:24 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 29993a06e32ea08b588bed93d7e088ea386daf7c Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:49:13 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621 Merge: e06da970 01f6a0f8 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:40:43 2019 -0600 Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827 gsd/develop: update submodule pointers for FV3 and ccpp/physics commit 01f6a0f87727751a8252a576bceed7bc5b9729a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:39:04 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit ea22d467cb4e6289768ca625133f68d803cc4772 Merge: 8ba3d4ae 3150c4b4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:32:58 2019 -0600 Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:30:38 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 8ba3d4ae5bfd786895d54c26f398821d28601821 Merge: 6aba4551 f91d7846 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 15:45:47 2019 -0600 Merge pull request #230 from climbfuji/hera_update_20190827 gmtb/develop: update hera config, enable regression testing commit f91d78461f1608bfdbe1de0d38a9527f8381cea7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 15:04:42 2019 -0600 Update submodule pointer for NEMS commit 235b712ba15d59c4d56aa990d3a9edeb30999496 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 15:40:00 2019 -0600 add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml) commit e74e0d2ebd6430e39c2f869c7241be858776f385 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:55 2019 -0600 Update submodule pointer for NEMS commit 290a484f1e3be763aced44c2dfd099c6d832ce2e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:33 2019 -0600 rt_hera_test.conf: temporary regression test config for testing on hera commit c52d27b0d8e99029d1e723ecde07d3ba0813da09 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:52:20 2019 -0600 tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:48:01 2019 -0600 modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera commit eb229d3cb145a7811d69348cb2167fbd5a5a097d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:47:33 2019 -0600 ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera commit 6aba455146a4a8d4629704e5226570116091691f Merge: 5c289838 75b5715e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:17:17 2019 -0600 Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827 gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework commit 75b5715e41c6f978defaa04e38d41b8d20326488 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 07:15:40 2019 -0600 Update submodule pointer for FV3, ccpp-physics, ccpp-framework commit 5c289838c1bc9d443319e4cdad4b23df5215fc77 Merge: eb7b7ae8 48000a93 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:13:20 2019 -0600 Merge pull request #218 from bluefinweiwei/cires_ugwp UGWP Version 0 commit 51299cadc6514199225605df04246e54446d6486 Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Tue Aug 27 11:03:43 2019 +0000 add MYJ surface layer scheme and MYJ PBL scheme to CCPP commit 75596f60b0d684413cf8a6f42567cd92195b3661 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 13:34:15 2019 -0600 remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036 Author: Grant Firl <grantf@ucar.edu> Date: Fri Aug 23 18:04:07 2019 -0600 remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list commit 48000a93dfd9b07159d3d006016c854e14a20886 Merge: 266c9885 e38eda36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:53:36 2019 -0600 Merge pull request #3 from climbfuji/ugwd_dom Delete tests/rt_with_ugwp.conf commit e38eda36b8d1d7181400059c3d7cc1af3511534d Merge: 789ab6bc 266c9885 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:50:02 2019 -0600 Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:48:59 2019 -0600 Delete tests/rt_with_ugwp.conf commit 266c9885f97153154fa6caaaf0bbac87addda38b Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:47:39 2019 -0600 Delete rt_ugwp_only.conf Removed. commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c Merge: 5ffd3ed8 adc9df36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:22:27 2019 -0600 Merge pull request #2 from climbfuji/ugwd_dom UGWD update for open PR to gmtb/develop commit adc9df36fbe5a866bcab77f709d368286d2a496d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 11:59:13 2019 -0600 Update submodule pointers commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a Merge: 1499c32c eb7b7ae8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:34:58 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom commit 1499c32c862f4471a72c85204208d01c847f8d2d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:11:39 2019 -0600 Update submodule pointers for FV3, ccpp/framework, ccpp/physics commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:10:02 2019 -0600 ccpp/suites/*: rename gwdps_pre to GFS_GWD_generic_pre, remove duplicate UGWP test, rename CCPP UGWP test to match existing IPD test, update regression test configuration files commit eb7b7ae83ec4cc828f640810512ab528f6f7a7c8 Merge: 91e485ca cb382b97 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 23 07:52:49 2019 -0600 Merge pull request #226 from climbfuji/update_submodule_pointers_gmtb_develop_20190823 gmtb/develop: update submodule pointers for FV3 and ccpp/framework 2019/08/23 commit cb382b97d933d35a3b40ab7dfa6428079ce810fa Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 07:50:39 2019 -0600 Update submodule pointers for FV3 and ccpp/framework commit 91e485cac197bb902c095770526dfc503f09f028 Merge: 00168544 4741dd2f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 23 07:49:50 2019 -0600 Merge pull request #225 from climbfuji/github_gmtb_develop_wcoss_cray_gaea_jet_cheyenne_20190819 gmtb/develop: bugfixes and updates for wcoss/cray/gaea/jet/cheyenne commit 4741dd2f282be63e8e3ceefc0c1e8ad3deb487ab Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 22 16:25:46 2019 -0600 modulefiles/theia.intel/fv3: workaround to fix EMC's broken yaml-cpp module commit 0dd206c8fc9afde82ee11d145e6021e5e36a6d10 Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 22 13:40:10 2019 -0600 add noahmp_pre.F90 to ccpp_prebuild_config.py commit 816818024cc3b512794a1a5507628157de8ce23d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 22 12:25:37 2019 -0600 doc/README_CENTOS.txt, modulefiles/linux.gnu/fv3: final touches on documentation, update of modulefiles to match the defaults in READ_{CENTOS,UBUNTU}.txt (strictly speaking not necessary) commit 0ab1908a4add63af6250cb33a68505a618a24202 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 23:20:31 2019 -0600 doc/README_UBUNTU.txt: add missing environment variables for buidling CCPP version on UBUNTU commit 6624c650b92a10bbbe282bf8f3f10618c4d4630c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 22:09:22 2019 -0600 doc/README_{UBUNTU,CENTOS,MACOSX_*}.txt: add note that 'make check' for ESMF is optional and that it can take a very long time commit 3893de3c5e7e7c561017cf0a6428c41ac07f7704 Author: Grant Firl <grantf@ucar.edu> Date: Wed Aug 21 11:39:39 2019 -0600 update ccpp_prebuild_config.py for NoahMP commit 7415d501a0d9ba1a1ef4235f15141cf254ca4eb5 Merge: 00168544 5ffd3ed8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 14:24:29 2019 -0600 Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into HEAD commit 6151127e825b9c195a2e3088989910359736355f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 12:29:42 2019 -0600 doc/README_CENTOS.txt: instructions for configuring CentOS linux systems, similar to the existing Ubuntu Linux instructions commit 0d4dd7f1140793f21e9bb7989cf4ada7fb4f0245 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 11:27:38 2019 -0600 doc/README_UBUNTU.txt: update documentation to latest state, simplify installation of netCDF commit 1d9d132652c04a8c1c7ad8f4393cb7fb7d31f4a1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 11:25:51 2019 -0600 tests/rt_ccpp_gmtb.conf: remove PGI compiler, this allows to remove multiple entires for runs that only work with Intel and GNU; remove wcoss entries (no dynamic builds), replace gaea (no dynamic build) with jet commit f9ebd24090c38d5037d315f42b5b2f7029c0437b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 10:03:28 2019 -0600 tests/rt_ccpp_gsd.conf: enable running GSD regression tests on other platforms than theia (regression test baseline now contains GSD input data) commit b2a7580ced26fd21dd9b98688911747e89cfe10b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 10:00:35 2019 -0600 tests/rt_ccpp_caps.conf: remove PGI commit d1e2b5c8f23cb5c1c78186270b39c54540fcf8c6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 09:58:44 2019 -0600 conf/before_components.mk, modulefiles/theia.gnu/fv3: replace user-based libraries with modules located in GMTB project directory, enable theia.gnu for testing commit ffc518e0f4f139fcab0b4138f5e4b78542c25f06 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 21 09:56:32 2019 -0600 Update ESMF on Cheyenne, Gaea, Jet; for Jet, also remove the module load anaconda (no longer needed and causes ccpp_prebuild.py to fail) commit e64d8a75dd76d5bed8c1eb47b2ae74b18ee6006f Merge: 00168544 73d2015f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 19 09:54:08 2019 -0600 Merge branch 'gaea_jet_cheyenne_support_and_initial_gnu_tests' of gerrit:NEMSfv3gfs into HEAD commit e06da970ac5fb5f177fe6e3baba9ff70e3f44ebd Merge: 18cd1a1a 175971b7 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 19 08:53:49 2019 -0600 Merge pull request #224 from climbfuji/gsd_develop_update_submodule_pointers_20190819 gsd/develop update submodule pointers 2019/08/19 commit 175971b7d34d49c371f659adeba870b91628cbc0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 19 08:51:05 2019 -0600 Update submodule pointer for FV3 commit 18cd1a1aadddb816b0f8903fcb059556768b001b Merge: 9fbef48c f663d381 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 19 08:48:34 2019 -0600 Merge pull request #221 from climbfuji/update_gsd_develop_with_vlab_master_20190816 Update GitHub gsd/develop with Vlab master 2019/08/16 commit 001685445cb219fd9c4565c0bc3885800c68f813 Merge: 50eca7bb df214421 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Aug 17 16:32:16 2019 -0600 Merge pull request #223 from climbfuji/gmtb_develop_update_submodule_pointers_20190817 gmtb/develop: update submodule pointers 2019/08/17 commit df214421c29449cb1f800ed33ffe3b7a9a87663c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Sat Aug 17 16:30:49 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/framework ccpp/physics commit 50eca7bbf0cb47d05591286257acd6c5fa4c2edc Merge: de32c317 1686f099 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Aug 17 16:28:47 2019 -0600 Merge pull request #212 from climbfuji/make_linux_and_macos_modulefiles_flexible Generalize and update Linux modulefile, add support for hera commit f663d38105a20ddc0c60467493972c47f0aa35e9 Merge: 2a1c6868 9fbef48c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 13:47:46 2019 -0600 Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into update_gsd_develop_with_vlab_master_20190816 commit 9fbef48c1b10bc348acc0ca073248e04be7da5b5 Merge: f86243fc a995462a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 13:47:28 2019 -0600 Merge pull request #217 from climbfuji/update_submodule_pointer_NEMS_20190816 gsd/develop: update submodule pointer for new NEMS repo commit 2a1c6868319d02394b1012be4fe4bd05bc77d1cd Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit 9dfe49f9e0d244186055e272d1298f1e3b18c799 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit ef403be0795a476ead513ff57ffb5c1f9e75aa7a Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit 9d7ddc8695a0742b4865582dabc38824b0b321b6 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Fri Jul 26 13:51:22 2019 +0000 Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed. Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578 commit b53a1117e79822ae158ba8e7f41f10b206c1bf68 Author: Jun.Wang <Jun.Wang@noaa.gov> Date: Sat Jul 20 14:17:26 2019 +0000 NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c commit 1686f099f08ac2a7f0909c292619fededec1aabf Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 12:25:22 2019 -0600 Update submodule pointer for ccpp/framework commit 4418499222f2ba30e6965160c4e59493baa202d4 Merge: 0cd98189 4524ac0b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 12:03:42 2019 -0600 Merge branch 'update_gmtb_develop_from_vlab_master_20190816' of https://github.com/climbfuji/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit 4524ac0b7a4982d28e50c6cebb1b514ce6ac7b7e Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit 8b114af25680fe70f8d302cac8c087e87c472b14 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit f61d93cb6fb5bf5bacf6c0d6c38429bb71af4f71 Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit 8a1e235d57a13d40e8ba71d3ce174d62dfa4f265 Merge: 62eaf40f 8ad5805c Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 11:41:45 2019 -0600 Merge pull request #220 from climbfuji/update_submodule_pointer_fv3 Update submodule pointer for FV3 commit 8ad5805ce1c219f8ba2962d6e84403dd11dfeac2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 11:40:27 2019 -0600 Update submodule pointer for FV3 commit 62eaf40f77eae7a450913e9aba54b967da37b9b3 Merge: a8e8fa58 f6eae698 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 16 11:36:46 2019 -0600 Merge pull request #219 from climbfuji/update_github_master_from_vlab_master_20190816 Update GitHub master from Vlab master 2019/08/16 commit f6eae698bf40e3adca1b8d95417cb2c8905df7f4 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:59:04 2019 +0000 Fix hash to NEMS commit dcc7a818cc8a19c0ec894015c4bd0d8003768fc0 Author: Ratko Vasic <ratko.vasic@noaa.gov> Date: Thu Aug 8 16:29:12 2019 +0000 NEMS transitioned from Vlab to GitHub. NEMS documentation is moved to separate repository: NEMS-doc (https://github.com/NOAA-EMC/NEMS-doc) Clone NEMS from new repository: git clone https://github.com/NOAA-EMC/NEMS commit a9cb714dd858e2d46571cd89776275847e2ced7a Author: Ratko Vasic <Ratko.Vasic@noaa.gov> Date: Mon Aug 5 18:34:48 2019 +0000 This commit is part of group effort (Raffaele, Gerhard, Jessica, Dusan and Ratko): Summary of updates in NEMS commit: -- removes 'module load slurm' commands -- Gerhard's mediator updates to run large number of ATM/MED pets and have ATM/MED on diff PETs: https://vlab.ncep.noaa.gov/redmine/issues/66089 -- Increase path size of directory for building WW3 error capturing in NEMS: https://vlab.ncep.noaa.gov/redmine/issues/65507 -- Other WW3 NEMS makefile updates: https://vlab.ncep.noaa.gov/redmine/issues/66085 -- Raffaele's change on debug mode of compiling fv3_gsdchem Applications: EMC_FV3-MOM6-CICE5 -- Updated module to point to ESMFv8.0.0bs40 EMC_FV3-GSDCHEM-WW3 -- Updatedmodule on theia to point to ESMFv8.0.0bs32 on theia and 40 on phase2 (Does not run GSDCHEM compsets here). EMC_FV3GFS-GSDCHEM -- Updates to run ESMFv8.0.0bs40 required pointing to the GSDCHEM 0.8.7_esmf8_bs40 branch, updating modules to point to ESMFv8.0.0bs40 and creating a baseline on WCOSS Cray NEMSfv3gfs -- Updated module to point to ESMFv8.0.0bs40 commit f595bcfeb55c8503c3b3f290cb22169fe75b6065 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Fri Jul 26 13:51:22 2019 +0000 Fix an issue introduced in the previous commit where merge conflict markers were inadvertently committed. Change-Id: Ib699fae7acda1bbb2cf6475461b41d09a6fba578 commit ae772b0a3fc5b75e3814f2328ac35139d4f4ed99 Author: Jun.Wang <Jun.Wang@noaa.gov> Date: Sat Jul 20 14:17:26 2019 +0000 NEMSfv3gfs: This commits #refs 65267 adding obs-based roughness length formulations and adjustment of K for hurricane simulations Change-Id: Ia71047b284c7ae09b390a2e375b8cba94fdfc46c commit 5ffd3ed8b437297040036dc835f86142da8e8879 Author: Weiwei <weiweili@ucar.edu> Date: Wed Jul 3 12:23:33 2019 -0600 new file: ccpp/config/ccpp_prebuild_config.py new file: ccpp/suites/suite_FV3_GFS_2017_gfdlmp_ugwp.xml new file: parm/ccpp_ugwp.nml.IN new file: tests/rt_ugwp_only.conf new file: tests/rt_ugwp.sh new file: tests/tests/fv3_gfdlmprad_ugwp new file: tests/tests/fv3_ccpp_gfdlmprad_ugwp new file: tests/rt_ccpp_gmtb_with_ugwp.conf new file: tests/rt_with_ugwp.conf commit a995462aeaa86ce2640c75b77847ff2b9709ce5e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 10:08:44 2019 -0600 Update submodule pointer for NEMS following transition of EMC NEMS repo Vlab -> GitHub commit 0cd98189b738c9d1fafef7d8c8011582fb6b677b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 09:55:10 2019 -0600 Update submodule pointer for NEMS following the move from Vlab to GitHub commit ac49f23be40492ab8908161e5c48cd7f10f6c499 Merge: a2c18766 de32c317 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 16 09:22:54 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit de32c31777ff15f0f850bcdc6b7f18e049993794 Merge: ddcf419d d1932bc5 Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:20:59 2019 -0600 Merge pull request #216 from llpcarson/update_nems Update submodule pointers for new NEMS repo commit d1932bc52876a361c3234b00bb0a18aa6039babd Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:15:13 2019 -0600 Update submodule pointers for new NEMS repo commit a8e8fa58e812f2d0fe88e05c8d278af55ff5a4bf Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 09:11:32 2019 -0600 Update submodule pointers for new NEMS repo, latest ccpp-physics (some SCM updates only) commit a2c1876603ea7b6e959d85d27566f7350a8398a2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 15 17:20:11 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit 30a41c84d22b9f8bf03d086017c2e5d420531c59 Merge: 42be0321 ddcf419d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 15 17:17:29 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into make_linux_and_macos_modulefiles_flexible commit 42be032139a3e79533fd78f22fedac23efacd056 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 16:49:50 2019 -0600 Add support for hera with juno (hera test system) modifications commit ddcf419d388d2d181aa0a9a5a2f6a9e19d41539e Merge: 1b5d9cc1 9884db3d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 15 12:01:13 2019 -0600 Merge pull request #213 from climbfuji/update_macosx_20190811 Update MacOSX build configuration 2019/08/11 commit 9884db3d03067c73ec6f66e23769d8af25fef7a4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 08:33:39 2019 -0600 Update submodule pointer for FV3 commit 450819fcfcbdb624b33aa4e41fb3efcdccefd727 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Aug 14 08:33:28 2019 -0600 doc/README_MACOSX_clanggfortran.txt, doc/README_MACOSX_gccgfortran.txt: final touches to install/setup documentation commit e46d3256356a971cbcaa3ce520327115a485a1ad Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 14:48:14 2019 -0600 doc/README_MACOSX_*.txt: add missing command for ESMF commit 730bdfe2286a51857b32da2a999a6f8ab51e5653 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 10:27:56 2019 -0600 Update submodule pointer for FV3 commit 99ef65ba88b8964bd6c757dab910710e0f0f7107 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 13 10:27:41 2019 -0600 doc/README_MACOSX_clanggfortran.txt: remove TODO reminders commit e2c20771b790076a9c932b45ba0d30204914e059 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:03:30 2019 -0600 modulefiles/macosx.gnu/fv3: update library versions, adjust to work with both clang+gfortran and gcc+gfortran commit 1b3302e8cdc59aa302240a0b03ecb34141202ac5 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:02:43 2019 -0600 doc/README_MACOSX_*: work in progress, saving progress commit 35d02b6f2842d5951122777ddb6630f4ea68959d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 21:01:46 2019 -0600 Update submodule pointer for FV3 commit f86243fce831151f943d64b7bba62391a03f89af Merge: c7dc843e a0596c86 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 12 20:30:08 2019 -0600 Merge pull request #215 from climbfuji/update_submodule_pointer_20190812 Update submodule pointer for ccpp/physics commit a0596c864d8936f39a05ff314eb593211aae0b65 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 20:28:33 2019 -0600 Update submodule pointer for ccpp/physics commit c7dc843eb975f33368037556d0ecf6a55649584f Merge: 1ebaea29 3d01b44f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Aug 12 20:26:50 2019 -0600 Merge pull request #214 from climbfuji/bugfix_ruclsm_ice_temp_landmask_landuse_inconsistencies Bugfix RUC LSM ice temperature initialization, appbuild bugfix commit ceef93aa0a0f5815bbca4a5fbf281bb4d9adefbe Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 09:23:58 2019 -0600 Work in progress: provide instructions for both clang+gfortran and gcc+gfortran on MacOSX commit 3d01b44f5b316ca5bfeb0dfa8e570074921bdfec Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 08:18:45 2019 -0600 Update submodule pointer for ccpp/physics commit d4773492a63cfe26bcb84c6d50c78e86855f4b05 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Aug 12 08:17:43 2019 -0600 tests/tests/fv3_ccpp_appbuild: bugfix, add back description/control dir that were unintentially removed in a previous commit commit ae4795908cfba0955c7aed812f717cf54562cb62 Author: dom <dom@dom-loaner.local> Date: Sun Aug 11 16:07:59 2019 -0600 conf/configure.fv3.macosx.gnu, modulefiles/macosx.gnu/fv3: add flexibility by using user-defined compiler commands and library locations (through environment variables) commit 619382c41818dfee04a5ab1f5c3cafde7fab821b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 9 10:35:07 2019 -0600 modulefiles/linux.gnu/fv3: allow user to specify own locations for compilers and libraries commit 1b5d9cc192f1032d899468379569be64a7b13bd1 Merge: e8a4da85 03553110 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 1 16:27:31 2019 -0600 Merge pull request #211 from climbfuji/github_gmtb_develop_update_submodule_pointers_20190801 GitHub gmtb/develop update submodule pointers 2019/08/01 commit 0355311007afd0231f93bf5039e72d6df4125292 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 1 16:25:10 2019 -0600 Update submodule pointers for FV3, ccpp/framework, ccpp/physics commit e8a4da8588c7495408a931cce323ca3c6f5cd190 Merge: b06eeb95 ab06c106 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 1 14:46:17 2019 -0600 Merge pull request #210 from climbfuji/new_metadata_format_step1_20190725 Migrate to new metadata format step 1 commit bd4cb27b7cc39d246f1aa5c055beb2506427f601 Merge: 1ebaea29 b06eeb95 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 1 08:22:28 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into HEAD commit ab06c106e05811faf6e7ae7107769657c3e8b9e0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 16:26:46 2019 -0600 Update submodule pointers for ccpp/framework and ccpp/physics commit 74d98ff31771e50553e2eb31e6b8cafcfc305008 Merge: b77f1871 13619a43 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 15:49:32 2019 -0600 Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD commit b77f187103fbbcf25c0871a328f094f609761193 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 31 13:39:37 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new type definition files and TYPEDEFS_NEW_METADATA configuration entry commit 73d2015f97e3730a334c532eef46f4ae2a3e4193 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Jul 22 20:49:37 2019 -0400 tests/rt.sh, tests/fv3_conf/fv3_qsub.IN_jet -> tests/fv3_conf/fv3_slurm.IN_jet: change scheduler on jet from Moab/Torque to Slurm commit 2312a74d685f0c348b71c41af86eefc6606fd196 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 15:14:44 2019 -0600 conf/before_components.mk: enable jet.intel commit e6cda943e2adc3b54005a64805c667a9185f02c4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:51:30 2019 -0600 Update submodule pointer for FV3 commit 0642cc07aa0808fc86a538e9b2ae8f8295e569ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:51:04 2019 -0600 tests/rt.conf: add jet.intel similar to gaea.intel commit 8607bea695293c71f879e70d910853b81b492ea5 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 14:49:21 2019 -0600 Update modulefiles/jet.intel/fv3 to use modules created by GMTB commit 1ebaea2974ba4f06f4c1c114faa03fde94c3e293 Merge: 2605f0b7 72c10102 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Jul 19 11:47:22 2019 -0600 Merge pull request #209 from climbfuji/update_submodule_pointer_20190719 Update submodule pointer for ccpp/physics commit 72c10102ce07ac8c465f571bea6a6cd5aa5fe088 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Jul 19 11:45:57 2019 -0600 Update submodule pointer for ccpp/physics commit 2605f0b773ab7a862f9152a0c214f8da372e3d1e Merge: cad0f201 820e0cc2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Jul 19 11:45:20 2019 -0600 Merge pull request #208 from climbfuji/gsd_develop_ruc_bugfixes_sar_update_surface_flux_bugfix_inactive_20190718 Gsd develop ruc bugfixes sar update surface flux bugfix inactive 20190718 commit 820e0cc2a94c9599b4a48e0f7c54900792e8cfbe Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:28:28 2019 -0600 Update submodule pointer for ccpp/physics commit d954359f8d36cda0306e9f51a8f5f3797945cd2f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:28:08 2019 -0600 ccpp/suites/suite_FV3_GSD_v0.xml: add calls to temporary interstitial schemes for RUC-sfc_sice interaction commit c3993781d192fa061dc9484342b923e149597b0f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 21:27:13 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add temporary interstitial schemes in lsm_ruc_sfc_sice_interstitial.F90 commit a8d3ec08a9ed65de0bf45d7bdd4974b7a9ae6c83 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 15:27:48 2019 -0600 conf/configure.fv3.wcoss_cray, ccpp/build_ccpp.sh: set correct REPRO compiler flags for Intel 16, pass legacy-Intel flag to cmake commit e0b77299c83e21bd38a1cf0a9cb4617e461c4af9 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:13:16 2019 -0600 tests/rt_gnu.conf: initial set of GNU-based regression tests, Cheyenne only commit 35c2ef3f34ca3ca4086d3e71b4c610b56e2659b8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:12:47 2019 -0600 tests/rt_utils.sh: update of regular expression for Cheyenne only commit 4aa66b51bde51c9ec2bb3ca0b240a8bfd71bf2af Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:12:03 2019 -0600 tests/rt.sh: temorary, change location of regression test baseline to ESRL-GSD-GMTB project directory commit ed13c0038d6bd15da146321b8ca04ab632a07abc Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:10:58 2019 -0600 modulefiles/gaea.intel/fv3, modulefiles/gaea.intel/fv3.intel-16.0.3.210: update of modulefiles on gaea for both Intel 16 and 18 for CCPP commit b99c6e2a1058fea4ea7c083bcf7ba54cd9fc62b6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:09:38 2019 -0600 Update of Intel and GNU modulefiles for Cheyenne following the major OS upgrades beginning of July 2019 commit b74241682499f54e474d087fdc6797932534f459 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:08:31 2019 -0600 conf/configure.fv3.gaea.intel: add option to use Intle 16, adjust repro flags if Intel 16 is used commit 89024d4dd5034aedec7ed197e84388e888c01a7f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:03:32 2019 -0600 conf/before_components.mk: enable gaea.intel, add switch to use Intel 16 compiler on this machine (default is Intel 18) commit 9909cd1c5711baf1a59595f3e4047aaa8b960606 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 11:01:42 2019 -0600 ccpp/CMakeLists.txt, ccpp/build_ccpp.sh: add option INTEL16=Y to build_ccpp.sh, which triggers a cmake flag LEGACY_INTEL to use a different fp-model option in REPRO mode commit cad0f201bf3de40b3e6b4f24a491ff18d654ac5b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Jul 18 10:46:02 2019 -0600 Update CODEOWNERS to enable branch protection commit 89a0f8eaf60b393739658b9605de3194d8159a9d Merge: 259b675c c7c692c0 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 20:50:49 2019 -0600 Merge pull request #207 from climbfuji/gsd_develop_update_submodule_pointers_20190717 gsd/develop: update submodule pointers for FV3 and ccpp/physics commit c7c692c02b8a680c6e8f7c03f0a46eee1afdbd4b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 20:49:18 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit 259b675cfd32286d7995b7c5a2483344f0e81213 Merge: cb0d5e30 75906385 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 20:48:13 2019 -0600 Merge pull request #206 from climbfuji/add_regression_tests_20190717 gsd/develop: add regression tests for Thompson only, GF only, MYNN only & cleanup commit 759063853f2cae2173afe9234c7d04424baaafb7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:47:10 2019 -0600 tests/fv3_conf/ccpp_gsd_run.IN: add logic to use correct field table, depending on choice of microphysics schemes and whether a TKE PBL scheme is used commit 835265e06943d297959cc45645d0d5c516e675e2 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:31:47 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit bb7f8838d76dba2f3b8ef85a3015f3fa51b8dd2f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:31:32 2019 -0600 parm/ccpp_gsd.nml.IN, tests/fv3_conf/ccpp_gsd_run.IN, tests/rt_ccpp_gsd.conf: use additional namelist variables for more flexibility commit d454c1cff7d9cf740f2129620f09eddb8fe0cd30 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:29:19 2019 -0600 tests/tests/fv3_ccpp_*: add new tests for individual schemes of the GSD suite, remove increase of wallclock time on Cheyenne commit b93828f3c8f338f9bc5a56f0c67a9b88765efa74 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 17 14:28:07 2019 -0600 tests/default_vars.sh: add additional default variables for microphysics commit b06eeb95aeba76e3ad3e6210cb8b4ff81707086b Merge: f4790463 4e253679 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Jul 17 09:42:39 2019 -0600 Merge pull request #205 from climbfuji/gitmodules_add_default_branches_20190716 gmtb/develop: add default branches for submodules to .gitmodules commit 4e25367977bbfb401e604e867cafd9e3b09892f0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:15:37 2019 -0600 .gitmodules: set default branches for submodules commit cb0d5e30c0a244e1bc14b57b9dbc331b7781319d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:04:21 2019 -0600 Update submodule pointers for all submodules commit 22fd642f89cd516f177e160ecb486d6ed179a56c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:04:06 2019 -0600 .gitmodules: set default branches of submodules to gsd/develop commit f1b1245a9f566a13b1d2dabca46a12729fd1c418 Merge: f9330c32 f4790463 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 16 15:03:24 2019 -0600 Update CODEOWNERS to GSD t…

junwang-noaa · 2019-12-19T16:12:49Z

README.md is added to the repository in pull request #9, close the issue.

Merge remote-tracking branch 'upstream/develop' into support/HAFS

- for macOS with LLVM clang, turn off OpenMP (from UFS public release) - switch to Intel 18 on wcoss_cray - new regression tests with RRTMGP using current control as basis Squashed commit of the following: commit 528c789415d6433530ed5d7867a0054cba3981ae Merge: e447123 1e400e4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Apr 14 07:03:41 2020 -0600 Merge pull request #40 from climbfuji/update_dtc_develop_from_emc_develop_and_missing_ccnin_updates Update NCAR dtc/develop from EMC master, apply missing updates from CCN/IN commit commit 1e400e40b5868d894bcb66aefdfdc5507eedf988 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Apr 14 07:00:12 2020 -0600 Revert change to .gitmodules and update submodule pointer for fv3atm commit ebb041a336f9b7dfbb6d9b13913305edf76b7131 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Apr 13 14:50:26 2020 -0600 Fix typo in tests/rt_ccpp_dtc.conf commit 6c0f94617d91a33375cddb3f20aa808bbab11dc1 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Apr 13 08:45:52 2020 -0600 tests/rt_ccpp_dtc.conf: remove move tests that are already covered in tests/rt.conf commit 246c251fb9366001c8bde0d9332e6c7e7141c6f0 Merge: 87876b1 7c3cdca Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Apr 11 06:18:32 2020 -0600 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into update_dtc_develop_from_emc_develop_and_missing_ccnin_updates commit 87876b15c3977fa624d90331db5effe8d6746d98 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Apr 10 14:24:02 2020 -0600 Update .gitmodules and submodule pointer for fv3atm for code review and testing commit e4471237aa8e62420daa30ce031e706953c4cbf6 Merge: fa94ff7 6897b78 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Apr 10 11:39:04 2020 -0600 Merge pull request #38 from climbfuji/update_dtc_develop_from_emc_develop_and_other_updates_20200409 Update dtc/develop from develop and other updates 2020/04/09 commit 6897b78788837f6e9fab200f14965889397d6549 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Apr 10 11:36:59 2020 -0600 Revert change to .gitmodules and update submodule pointers for fv3atm commit 53b8c994c3ecdb33a4b90159fc0bb16d641fd369 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:28:45 2020 -0600 Update .gitmodules and submodule pointer for FV3 for code review and testing commit e38adebd16f0c342c155456ce7c7d3af551e9820 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:28:17 2020 -0600 CMakeLists.txt: require CMake 3.0 commit fb9f7511749290ecc47acd96bfd1033ae76e9a97 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:27:48 2020 -0600 tests/rt.sh: align directory structure on Cheyenne with Hera, update date tag of regression test baseline commit a91446ca83b1f69bde1ae0ade3d3961603e2cded Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:27:17 2020 -0600 tests/rt_gnu.conf: compile on all platforms, not just on cheyenne (but don't run anywhere else yet) commit af7042e26978255bd224577c6d93b99fcab3b3f9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:26:33 2020 -0600 tests/fv3_conf/ccpp_control_run.IN: change name of input data for RRTMGP tests commit 11f6d44c1f9edd30ade6826b968d8d9ce9e2ac8e Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:25:55 2020 -0600 cmake/configure_macosx.gnu.cmake: turn OpenMP off for LLVM clang compilers commit d248227e78ae9e13006e1c88f3301d4d61fd1f8f Merge: dc3590f ed314ae Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 11:05:05 2020 -0600 Merge branch 'wcoss_cray_intel18' of https://github.com/DusanJovic-NOAA/ufs-weather-model into update_dtc_develop_from_emc_develop_and_other_updates_20200409 commit dc3590fd48463e4be6083e31dfdd590b61adbb19 Merge: fa94ff7 7097078 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 10:40:26 2020 -0600 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit ed314ae6f5c3a847d7b35c7a008655a78a1e844e Merge: f030745 7097078 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Thu Apr 9 16:12:50 2020 +0000 Merge branch 'develop' into wcoss_cray_intel18 commit f030745a83d8767247e8a24d339f3be02c084d4e Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Wed Apr 8 20:15:09 2020 +0000 Swicth to Intel 18 on WCOSS Cray. Run full rt.sh test on WCOSS Cray. commit fa94ff7c2366b45ee4007ee39a66157c9ac84d74 Merge: 300a02d 78232d1 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Apr 3 15:35:01 2020 -0600 Merge pull request #34 from climbfuji/update_submodule_pointer_fv3atm_20200403 Update submodule pointer for fv3atm 2020/04/03 commit 78232d1a64066e484ad7ecca29e6cb27d813b7f8 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Apr 3 15:33:24 2020 -0600 Update submodule pointer for fv3atm commit 300a02da78769e73a82a6e490d9569168e619626 Merge: 02683a1 1b2c8e5 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Apr 3 11:48:04 2020 -0600 Merge pull request #33 from climbfuji/avoid_recompile_without_change dtc/develop: speed up static compilation commit 1b2c8e54e605101fa81463d06204f73c38476c48 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Apr 3 11:47:41 2020 -0600 Revert change to .gitmodules, update submodule pointers for fv3atm commit 93f78a0adec482e955422d1cad8b450fbaf5e1eb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 2 13:59:12 2020 -0600 Update .gitmodules and submodule pointer for fv3atm for code review and testing commit 02683a142cb039e3aaa45ad3fa7b33211ac4b56b Merge: 1336960 b6584d0 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Apr 2 08:14:47 2020 -0600 Merge pull request #32 from climbfuji/cleanup_radiation_tendencies Cleanup radiation tendencies, add RRTMGP tests on Cheyenne commit b6584d043bac3f632d9d3009b69580e8212a197e Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 2 08:14:10 2020 -0600 Revert change to .gitmodules and update submodule pointer for fv3atm commit 7e39d9a5b495de78cec2714792291c8bbcf014bc Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Apr 1 10:13:45 2020 -0600 Add RRTMGP tests and other DEBUG tests to regression test configurations for Cheyenne commit a753eee47443b7627fb7b767de7a4c768524a015 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Apr 1 10:12:46 2020 -0600 Update .gitmodules and submodule pointer for fv3atm for code review and testing commit 133696003b12fbbc683fda6e6b8bf8a2a0f3ff55 Merge: 75145a6 1c5ea68 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Mar 30 09:19:36 2020 -0600 Merge pull request #31 from climbfuji/update_cheyenne_gnu_to_9-1-0 Update GNU compiler on Cheyenne to version 9.1.0 commit 1c5ea68db6a4b7c0fcee2be6dbbc78c13fd59bd4 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 30 07:57:45 2020 -0600 modulefiles/cheyenne.gnu/fv3: update GNU compiler used on Cheyenne to version 9.1.0 to be able to compile RRTMGP code commit 75145a6fcd06dd224d510cf6ca00dc83862525f4 Merge: b02442b 6d42d95 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Mar 26 10:38:57 2020 -0600 Merge pull request #29 from climbfuji/add_rrtmgp_dom RRTMGP in ufs-weather-model commit 6d42d95235a8291629d77f42c1c5cf2d4f516102 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 26 10:36:08 2020 -0600 Revert change .gitmodules and update submodule pointer for fv3atm commit 55936be6cb9ee463bb7195173fe58a1ec05f1e8f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 26 10:12:14 2020 -0600 Update submodule pointer for FV3 following code review changes commit 9a647bd60a72f1a6454bbcb263d4361189c368d8 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 25 14:44:11 2020 -0600 Add REPRO test for fv3_ccpp_rrtmgp commit a799e2958eed087ef594c9191da2dd23c94fcc39 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 25 06:25:12 2020 -0600 Update submodule pointer for fv3atm after merging Python 3 compatibility PR commit e04023e2abbde1f0b6d43dc5100b5af2cbb5e005 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 23 13:59:44 2020 -0600 Update submodule pointer for FV3 after RRTMGP bugfixes commit bf0a2c421997f9aca4e29066de59d6b9061b6274 Merge: b6d9813 44604a0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 19 11:57:40 2020 -0600 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into add_rrtmgp_dom commit b6d9813220f8c40294ea0f823f4d9bdcc165f40d Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 19 11:46:35 2020 -0600 Add RRTMGP regression tests in DEBUG and PROD mode, update compile_cmake.sh to work with the CCPP framework changes commit acd17fcdbbd113187814b4e5cf1d0a46bedfff7b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 18 06:31:56 2020 -0600 Update .gitmodules and submodule pointer for fv3atm for code review and testing commit b02442b1e24e6291229edb3b9381d201b6c49baf Merge: 028f778 1c9fb8b Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Mar 17 08:11:23 2020 -0600 Merge pull request #28 from climbfuji/final_pr_before_merging_to_develop_or_master_20200313 dtc/develop: final PR before merging to develop or master (support for hera.gnu, change rt.sh logic for parsing rt config files) commit 1c9fb8b164922e600c8f44e3034574a60d66cf21 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Mar 17 08:10:01 2020 -0600 Revert change to .gitmodules and update submodule pointer for fv3atm; keep NEMS submodule pointer as-is for now commit 12cd2813ab10c63e812bb18e1d9db748810d54b6 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 16 20:30:59 2020 -0600 Update submodule pointer for fv3atm commit d260b130908c761dbe774ae389ff0bc43e4006ec Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 16 10:10:37 2020 -0600 tests/rt_gnu.conf: run GFDLMP tests only on Cheyenne commit 24026e9e6fe0203c3ffeb4b547422cce10a1d801 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sun Mar 15 19:36:13 2020 -0600 Update .gitmodules and submodule pointers for FV3 and NEMS for code review and testing commit 3ff3f621a2641d547e77b620dfc4492badc07a43 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sun Mar 15 19:35:53 2020 -0600 Support for hera.gnu, compiler-specific baseline directory on hera, modify rt.sh so that COMPILE and APPBUILD lines without a machine name are executed on all machines (same as RUN lines), change rt_gnu.conf accordingly commit 028f7786ef05d422dba7578fd2eaff78cc92f182 Merge: cf3ba9a 103078a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Mar 13 13:08:58 2020 -0600 Merge pull request #27 from climbfuji/update_from_dev_emc_20200312_and_other_changes Update from emc/develop 2020/03/12 and other changes commit 103078a0b1337fd0cc7bf71af61d63a108e1579e Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Mar 13 13:06:56 2020 -0600 Revert change to .gitmodules, update submodule pointer for fv3atm commit 46b67da2ee62bca1d91b52115b536c8c942d8696 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Mar 13 07:49:51 2020 -0600 Bugfixes to regression test configuration files commit 43467b8c07a1d5ad2eafa3404fb654f1c49b1c02 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 13:17:53 2020 -0600 Turn of IPD stochy test, turn off IPD Thompson test, add GSD debug test, add Thompson/Thompson-no-aerosol prod and debug test commit def339f4fb1a058edd751e2af2656a32b0b8c9e6 Merge: 9a35215 cf3ba9a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 13:16:08 2020 -0600 Update date tag for baseline to 20200313 commit cf3ba9a6fa36acf1dd78d4d50068b0039c51b277 Merge: bde9300 edcf5df Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Mar 12 13:11:19 2020 -0600 Merge pull request #26 from climbfuji/merge_emc_develop_20200311_after_moorthi_before_dycore_pr7 dtc/develop: merge emc/develop 2020/03/11 (after Moorthi's commit, before dycore OMP bugfix) commit edcf5dfd7a48a2b181775a743b3b1a8b0c705d50 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 13:09:30 2020 -0600 Revert change .gitmodules and update submodule pointer for FV3 commit 9a352157499fa50686cf824ec739871afea3b63e Merge: 91a72c6 0b62be9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 11:22:59 2020 -0600 Merge branch 'merge_emc_develop_20200311_after_moorthi_before_dycore_pr7' of https://github.com/climbfuji/ufs-weather-model into merge_emc_develop_20200311_after_moorthi_before_dycore_pr7 commit 0b62be9d52379406a1b8d0e2fd708705aa676724 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 11:22:39 2020 -0600 tests/rt_ccpp_dtc.conf: bugfix, remove test that is no longer exercise/doesn't have a baseline commit 91a72c6e7b7b44c864ecb73e1f2031d7a327b7d5 Merge: 1bb0c09 0a88706 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 10:40:24 2020 -0600 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into merge_emc_develop_20200311_after_moorthi_before_dycore_pr7 commit 1bb0c093de9a7a00f98733a4ba543f9928683021 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 08:54:02 2020 -0600 Update .gitmodules and submodule pointer for FV3 for code review and testing, update CCPP regression tests from IPD, update tests/rt_ipd_prod_only.conf commit 2e485f130d044d7e3c189d8b691f5a3ed10be23c Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 11 15:14:01 2020 -0600 Update submodule pointer for NEMS commit 2a8b0a1cb78773228014a3ed6543204d7c31bc86 Merge: bde9300 efd63fb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 11 14:59:44 2020 -0600 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit bde930024ebb6be41652f13a4fab2928e198ae5c Merge: 67943a5 2d22078 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Mar 9 12:45:51 2020 -0600 Merge pull request #24 from climbfuji/update_dtc_develop_from_emc Update dtc/develop from emc/develop 2020/03/04 commit 2d22078fc4ba0b9243cf733fd985b206425709c4 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 9 12:44:14 2020 -0600 Revert change to .gitmodules, update submodule pointer for FV3 commit 6e7230e3203d23e9ab2d54e40d1c1d306aef27d0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Mar 9 10:22:28 2020 -0600 Remove regional tests that do not run on Cheyenne anyway, they are tested in rt.conf for all other machines commit b28f277fdb604382d255fa25e78cfe9556f7aee5 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Mar 6 14:46:47 2020 -0700 Bugfix for CCPP IAU test, turn off global c768 tests (frequent out-of-memory errors for both IPD and CCPP), turn off CCPP dynamic tests in rt_ccpp_dtc.conf and merge HAFS and CAPS regression tests into rt_ccpp_dtc.conf commit 6150bd4d288fe20a01810df00e6518ab00b77bf0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 4 09:37:20 2020 -0700 Update submodule pointer for .gitmodules for code review and testing commit 8d50b738f67b8d7f724c7d8e01e1d4664d7412f7 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Mar 4 09:31:33 2020 -0700 CCPP regression test updates from IPD commit d951469aeff67a51991aea6b3c3e1a5aa60e5c9b Merge: 67943a5 47c7f9b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Feb 28 09:02:05 2020 -0700 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit 67943a550c6783a8aa3575e608bf5c3688ddbab5 Merge: 2919f28 e07e3ea Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Feb 20 10:43:57 2020 -0700 Merge pull request #22 from climbfuji/update_rt_intel_cheyenne dtc/develop: update rt_intel.conf (for Cheyenne only) commit e07e3eae9b715ce8a59c08a6f3a0837b81a40851 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Feb 20 10:37:43 2020 -0700 Update tests/rt_intel.conf to reflect removal of GFSv15 and GFSv15plus regression tests commit 2919f28a56fb3127fca33976c4840cad156be4d1 Merge: 4b36630 3fe4713 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Feb 6 13:39:06 2020 -0700 Merge pull request #21 from climbfuji/dom_combine_prs_20200204 dtc/develop: combined PRs for ccpp-framework and ccpp-physics commit 3fe471391d68c969718f8764e835064cca72bd53 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Feb 6 13:38:26 2020 -0700 Revert change to .gitmodules, update submodule pointer for fv3atm commit 21e1c31cc7d9e7bf753d89df040b74edd78a0eab Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Feb 4 17:22:47 2020 -0700 Update .gitmodules and submodule pointer for fv3atm for code review and testing commit 4b36630a4076a4ef18d3c7651ab20f04c88908b2 Merge: 4c2d541 2907bf9 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Feb 3 07:51:23 2020 -0700 Merge pull request #20 from climbfuji/update_dtc_develop_from_develop dtc/develop: update from develop 2020/01/27 commit 2907bf95aa319e3ece0e4de2ff24858b01427327 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Feb 3 07:49:41 2020 -0700 Revert .gitmodules change, update submodule pointers commit 85e5a911ab95f532f7bdd4465eb4996225e58a35 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Jan 29 16:42:58 2020 -0700 Bugfix for tests/rt_ccpp_dtc.conf, need to specify dependencies for restart tests commit c61c4216adb669358380b79aeb3b60e399c198b0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Jan 29 08:39:46 2020 -0700 Bugfix for tests/rt_ccpp_dtc.conf, need to specify machine names for each COMPILE command commit 5df8b17873e1004497226b203765fad32d7e6b7a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Jan 28 16:19:47 2020 -0700 Revert baseline directory change in tests/rt.sh, use DTC baseline commit 5507b9a53e32ce9076f6bca1767a47a42ab053c1 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Jan 27 12:29:08 2020 -0700 Update tests/rt_ccpp_dtc.conf and tests/rt_gnu.conf; add temporary regression test config tests/rt_ipd_prod_only.conf commit 6ab3fda31af1372903b80a5c98377aafa3fdb19e Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Jan 27 11:53:34 2020 -0700 Update .gitmodules to use EMC'S NEMS repository instead of the NCAR fork commit 23cdb90b6dbf89a04047b74516d9fd5ed6ceae00 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Jan 27 11:34:39 2020 -0700 Update .gitmodules for code review and testing commit e69a08bdd7ec4c8079d04cb44a06ec46f90e2988 Merge: 4c2d541 52795b8 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Jan 27 11:33:00 2020 -0700 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit 4c2d541b95b34aa6507ffda2ccfd10058b039689 Merge: 5f1e9b4 2b6903e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Dec 26 08:04:33 2019 -0700 Merge pull request #19 from climbfuji/sar_fix_hrrr_ics Add regression test fv3_ccpp_gsd_sar_25km_debug commit 2b6903e7ee545fc5a0a5300d6190aee459d1dab6 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Dec 26 08:02:40 2019 -0700 Updates for new regression test fv3_ccpp_gsd_sar_25km_debug commit c428ab3e07ad6f994e384c396cc89931ba32c62b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Dec 26 08:02:02 2019 -0700 Update submodule pointer for FV3 following merge of https://github.com/NCAR/fv3atm/pull/22 commit 5f1e9b49b99ecc29878d5f7894f1d977501176d1 Merge: 9fad3f0 5b1e5d6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Dec 25 20:02:45 2019 -0700 Merge pull request #17 from climbfuji/ww3_rt_ccpp_dtc_conf dtc/develop: turn off WW3 tests in rt_ccpp_dtc.conf for platforms other than hera.intel commit 00d8b7718c906dba49b81e44efa72d35cb504a52 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 23 16:16:10 2019 -0700 Add regression test fv3_ccpp_gsd_sar_25km_debug commit 26b0ffa860608e9578b4d63c5a69a368782e6741 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 23 14:36:57 2019 -0700 Update submodule pointer for FV3 commit 9fad3f0890a856fe1062a7cb3ad99383f9a61f09 Merge: 430976c 0bcd135 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Dec 22 20:47:58 2019 -0700 Merge pull request #18 from climbfuji/revert_queue_change_cheyenne Revert PBS queue change on Cheyenne commit 0bcd1350b8a3e90616e8172a2a66fb4de88a7880 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sun Dec 22 20:45:16 2019 -0700 Revert PBS queue change on Cheyenne (back to premium) commit 5b1e5d6ee8eaa2f859302ee52df0c1f8e35c2354 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Dec 20 10:26:44 2019 -0700 Update of tests/rt_ccpp_dtc.conf: WW3 only supported on hera (hera.intel) commit 430976cee88d38609e36c78c4ebe1021800cba66 Merge: bf05b97 22efd1f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Dec 17 15:51:59 2019 -0700 Merge pull request #16 from climbfuji/update_dtc_develop_from_ufs_public_release_20191216 Update dtc/develop from EMC develop and ufs_public_release 2019/12/16 commit 22efd1f20708386b0a5bd805154108e524aca589 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Dec 17 15:51:12 2019 -0700 Update submodule pointer for FV3 following the merge of https://github.com/NCAR/fv3atm/pull/21 commit caf8a8e7e8fe67ce479722e861d77966428c4dc1 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Dec 17 14:39:07 2019 -0700 tests/rt.sh: update regression test baseline to trunk-20191217 commit fb701e32644081009dc0d4cc99a0ddf04fee62c8 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Dec 17 14:33:18 2019 -0700 tests/fv3_conf/ccpp_*_run.IN: remove INPUT and RESTART as first step, because CCPP regression test directories are reused when the same job is run twice in CCPP dynamic and static mode commit d071710fdcdb731eeed4017296f0f2fb1022e0a9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 16 07:25:55 2019 -0700 Rename suite FV3_GFS_v15.2 to FV3_GFS_v15p2, convert line endings to unix for parm/ccpp_v15p2_c96.nml.IN and parm/ccpp_v16beta_c96.nml.IN, updates from ufs_public_release branch commit 5a64854f435cee8d3d6d0096b4da0fdb50389aa9 Merge: bf05b97 3bc41ff Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Dec 14 07:17:25 2019 -0700 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit bf05b97c62a08ca7adf9dfe18345339a1f15f24f Merge: 9ac4703 b294dad Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Dec 9 11:06:01 2019 -0700 Merge pull request #11 from climbfuji/update_dtc_develop_from_emc_develop_and_collect_updates_20191205 Update dtc/develop from EMC develop and collect updates 2019/12/05 commit b294dad3f8d410157d12ed4d503be4f41dc2fc1b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 9 11:05:27 2019 -0700 Update submodule pointer for FV3 commit b95c95add815cf5b91c128179d4487db9bb3d17a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sun Dec 8 06:41:37 2019 -0700 Update path to fix files for CCPP FA regression test, add rt_ccpp_hafs.conf commit 2c913a44762795495399af6dadd6c143979775f2 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Dec 7 08:08:11 2019 -0700 GFS v15.2 and GFS v16beta namelists for CCPP for UFS public release commit 343c81601079265df3de8dac6834f1c8e41fd5b6 Merge: e34a99d e8896bb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Dec 6 07:53:03 2019 -0700 Merge branch 'dtc/develop' of https://github.com/panll/ufs-weather-model into update_dtc_develop_from_emc_develop_and_collect_updates_20191205 commit e8896bb03ffe55ffab67bf2ff9989ff3ce1d77fb Author: Linlin.Pan <Linlin.Pan@noaa.gov> Date: Fri Dec 6 00:32:57 2019 +0000 adding namelists for v15.2 and v16 commit ba683e9b08e0c3cef4ccde4cdc19c711a5201742 Merge: 0bf138f 9ac4703 Author: panll <lpan@ucar.edu> Date: Thu Dec 5 17:20:20 2019 -0700 Merge pull request #1 from NCAR/dtc/develop update commit e34a99d9cba55140106086bb663d4bcd75c0b9d1 Merge: 9ac4703 7b70ad9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Dec 5 15:52:42 2019 -0700 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into dtc/develop commit 9ac4703f17beabf2148cbe9faebd0b63eb2add17 Merge: 0bf138f 69ed25d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Dec 3 15:24:27 2019 -0700 Merge pull request #9 from climbfuji/dtc_develop_udpate_from_emc_20191127 dtc/develop: update from EMC 2019/11/27 commit 69ed25d21eb3a0896b9bbb8578a0a6db27a8a75d Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Dec 3 15:23:54 2019 -0700 Update submodule pointer for FV3 commit 20d3b9844615fe674db7c5ca49d34897d2d42f39 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 2 11:13:37 2019 -0700 tests/fv3_conf/ccpp_control_run.IN, tests/rt_ccpp_dtc.conf: bugfixes for new, coupled FV3-WW3 tests commit bc29b379d541ab84fb09d358300d0791cf5ba5d6 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 2 11:12:50 2019 -0700 tests/rt.sh: change default queue on cheyenne from premium to economy commit e26a6145cbd6239b2662580ceb881d58a6bb5ad9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 2 11:12:22 2019 -0700 tests/rt.conf: move cheyenne.intel tests to tests/rt_intel.conf commit 860f00e19d05a9104c9987e6fe4b4d719e0a00d7 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 2 11:10:53 2019 -0700 Point to 2019.01 tag for FMS, update .gitmodules commit 51d57f830ebbf941e26d710d28184f52543a34d5 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Dec 2 11:03:10 2019 -0700 Update submodule pointer for FV3 commit 03e8e036cb9d5ca45ccbf7fb57e9f313d6118534 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Nov 29 17:01:30 2019 -0700 Follow-up bugfix for tests/fv3_conf/ccpp_gsd_sar_run.IN, insert missing 'FV3' in path commit af5fce1939fe3a105246041b6ca2180e49515265 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Nov 29 17:00:51 2019 -0700 conf/configure.fv3.*.gnu: add '-Wall' to Fortran debug flags commit 2deb2e16798cea96a9879159ea5f28eebf3b78d2 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 15:28:01 2019 -0700 Update of CCPP regression test configurations to reflect changes from EMC commit defe5faedbc930ff8d6cd4cf1ecd2f0ab4140e24 Merge: 49d5095 dca7a75 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 15:03:38 2019 -0700 Merge branch 'develop' of https://github.com/ufs-community/ufs-weather-model into HEAD commit 49d5095ebf0b2e2c66438b6ae38d44957c9fa070 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 14:38:29 2019 -0700 tests/fv3_conf/ccpp_gsd_sar_run.IN: bugfix, correct path to CCPP libraries for dynamic build commit 4227033d37ee4bec3685a106eca5967bbabcbf0c Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 14:37:43 2019 -0700 Update submodule pointer for WW3 to match EMC commit 0bf138fabb51b071e54891b1f60ae5fb720e0736 Merge: 2857a21 04ad3e6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Nov 27 13:47:47 2019 -0700 Merge pull request #8 from climbfuji/merge-gsd_develop-and-nems_machine_env_var dtc/develop: merge gsd/develop, allow environment variable NEMS_MACHINE to overwrite (or set) MACHINE_ID commit 04ad3e68d43d9689fa6bb1f952c70daafa13540b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 13:46:15 2019 -0700 Update submodule pointer for FV3 commit 77bdaa9c6e61e973a05f3ddfbe9b6682ccb4207c Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 26 20:23:00 2019 -0700 parm/ccpp_gsd_sar.nml.IN, tests/rt_ccpp_gsd.conf: bugfixes for SAR and drag suite regression tests commit 5b903fb718a20b04d862a6043d85c72ec4f0f7f9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 26 12:03:50 2019 -0700 Update submodule pointer for FV3 commit d541054af0c7085f961a3e8099627f0dba891285 Merge: 6fc17ca c37646e Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 26 09:03:12 2019 -0700 Merge branch 'nems_machine_env_var' of https://github.com/climbfuji/ufs-weather-model into dtc/develop commit 6fc17ca178b20fe57111ef3b7ee2a22f3c0b31dc Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 26 09:02:09 2019 -0700 Merge NEMSfv3gfs gsd/develop into ufs-weather-model dtc/develop, squashed commit of the following: commit a9afb3607115ba35cc3c841bf48d410a048912c8 Merge: 6c9a70dc 2d13e99d Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Nov 21 15:44:02 2019 -0700 Merge pull request #279 from climbfuji/update_submodule_pointers_rdlai Initialize Leaf Area Index (LAI) from climatology and other submodule updates commit 2d13e99dc0c5a39ece155e6ac6eb2bd5ddcc1037 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 15:43:07 2019 -0700 Update submodule pointers for ccpp/physics and FV3 commit 1653ff116ddca30b690a7375006139eab55237de Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Nov 21 12:59:39 2019 -0700 Update submodule pointers for FV3 and ccpp/physics commit caed402a8f5a6a535e58284f63f678e692f341d9 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:24:56 2019 -0700 Update submodule pointer for stochastic physics to point to the head of the master branch commit 38c66d903797bdc7dbbc99589badece212a63412 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:30 2019 -0700 Update FMS to the head of the GFS-FMS branch commit 29fbfcad795536eb763499ea98e9596d03c9d483 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 20 16:13:08 2019 -0700 Update submodule WW3 to point back to the NOAA-EMC version, set correct hash commit 6c9a70dcdf5da8f1f678ad17523ef7533291062f Merge: 8b1bd280 fd8b7b48 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Nov 19 20:54:26 2019 -0700 Merge pull request #278 from climbfuji/add_gsd_sar_regression_test gsd/develop: add GSD SAR regression test commit fd8b7b487a7b6a2cb3ad0a2e395aaf874b6efd8f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 19 20:53:00 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: bugfix, correct name of control directory commit 86cc553107ace9e66429fbfee6e6e2a1dca88c73 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 14:39:06 2019 -0700 tests/tests/fv3_ccpp_gsd_sar: correct list of files to check commit 43dbf0504cf5f86b9ad416e2d6358043df3863fb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Nov 18 09:22:07 2019 -0700 Add regression test for GSD SAR commit 8b1bd2805a2543bb1a434dcc0718ca89e27ba284 Merge: c73f665b 13329bf9 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Nov 2 06:08:45 2019 +0900 Merge pull request #277 from climbfuji/gsd_develop_update_submodule_pointer_ccpp_physics_20191102g gsd/develop: update submodule pointer for ccpp-physics 2019/11/01 commit 13329bf9b7d8191a4e85789d52f4a6174bf61c50 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Sat Nov 2 06:06:24 2019 +0900 Update submodule pointer for ccpp/physics commit c73f665b5838a2db86ba5bf65157c89f4ed90cc5 Merge: fafa77ee 0f0778d4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Oct 28 12:54:28 2019 +0900 Merge pull request #276 from climbfuji/gsd_debug_test_and_submodule_pointer_update_20191028 gsd/develop: add CCPP GSD suite debug test, reduce timestep for Thompson MP tests, update submodule pointers commit 0f0778d4cb84150c2b1b3a2e0fe7501b897f2d9f Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:39:54 2019 +0900 Update submodule pointer for ccpp/physics commit c3c0379e1cb10b7060095b9a85c045d6b3058e8b Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 28 12:33:09 2019 +0900 Add new regression test for GSD suite in DEBUG mode commit cc2706d9c35fbbd69048c244dc0997107b9a3c78 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 25 11:14:30 2019 +0900 Reduce timestep for regression tests using Thompson MP from 1200s to 600s commit fafa77eeae3696ff1fd9922b88becd3644b9dd55 Merge: f3d1f6d2 e6b48fbe Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Oct 24 11:00:48 2019 +0900 Merge pull request #275 from climbfuji/gsd_develop_update_submodule_pointer_20191024 gsd/develop: update submodule pointer, remote theia commit e6b48fbea416696a5b23f6910df2697334c8d656 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Oct 24 10:57:13 2019 +0900 Update submodule pointer for ccpp/physics commit 1bc10a8b7da94ed4d3648157ad9a8dfcef25180a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:20:15 2019 +0900 Update submodule pointer for ccpp-physics commit b583bd011b9e4139c3ff9efc7fa0240554d39a28 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 21 08:19:12 2019 +0900 tests/rt_ccpp_gsd.conf: remove theia commit f3d1f6d212199af9eb47cd4e723eecbbdbd1f76c Merge: eac6d996 deec3095 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Oct 13 14:59:39 2019 +0900 Merge pull request #265 from climbfuji/update_submodule_pointers_20191011_1 gsd/develop: update submodule pointers for FMS and ccpp/physics commit deec3095e43efd3b1599052525a631faea17d7d0 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Oct 11 08:01:14 2019 +0900 Update submodule pointers for ccpp/physics and FMS commit eac6d996d84085d4010e8e1bfc8dff1855f9e21f Merge: 49f6c48e e49075d7 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 14:21:16 2019 -0600 Merge pull request #257 from climbfuji/update_submodule_pointers_gsd_develop_20190924 gsd/develop: update submodule pointers 2019/09/24 commit e49075d70b330b2a7dfa907d9bc7ad6e97a48992 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 14:19:43 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit 49f6c48edc94ba9d9ac0c143b6068ce56159cb00 Merge: 5ea40b23 221bd404 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 12:56:42 2019 -0600 Merge pull request #256 from climbfuji/update_gsd_develop_from_gmtb_develop_20190924 Update gsd/develop from gmtb/develop 2019/09/24 commit 221bd404496a25f133b1f4e7aaf068225dfd9446 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 12:51:44 2019 -0600 Update CODEOWNERS and .gitmodules for gsd/develop, update submodule pointers commit e30fc6c67c3c98ceab5b0859fe47780de0859b91 Merge: e7691783 3042e609 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 24 10:53:31 2019 -0600 Merge pull request #255 from climbfuji/cleanup_remove_thompson_satadj gmtb/develop: cleanup work 2019/09/24 commit 3042e6090e4e4b6d3f22d2e3ee0677df057263ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 24 09:52:12 2019 -0600 Update submodule pointer for ccpp-physics, remove Thompson MP + saturation adjustment tests commit e7691783692215fb713ba60ae2799f33a2147efe Merge: f1b4c707 d5051cd2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 10:16:50 2019 -0600 Merge pull request #254 from climbfuji/update_submodule_pointers_20190923 Update submodule pointers 2019/09/23 commit d5051cd2f28c7cb2df686db02664f98584c3fb70 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 23 10:15:15 2019 -0600 Update submodule pointers following https://github.com/NCAR/NEMSfv3gfs/pull/251 et al. commit f1b4c70787e949ac3557a4f4f89e549574c4065c Merge: 4d78478e e86179ec Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 09:33:06 2019 -0600 Merge pull request #251 from climbfuji/gmtb_develop_update_from_master_20190920 gmtb/develop: update from master 2019/09/20, remove TRANSITION mode commit e86179ec519baba659f29c71ea119cf010e6020c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 19:59:53 2019 -0600 Update submodule pointer for ccpp/physics commit 136b3af34a6c4c9c759fa13f49ca0009e8e9d1c4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 08:55:40 2019 -0600 Remove TRANSITION mode commit 20a5de0f2bab4ddea82df0bb2682738244ac86f0 Merge: c97254f5 31e98b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:41:07 2019 -0600 Merge branch 'master' of gerrit:NEMSfv3gfs into HEAD commit c97254f5dc9e84281fa26098b603e3436cead0ac Merge: 4d78478e fadc8080 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 20 07:24:46 2019 -0600 Merge branch 'master' of https://github.com/NCAR/NEMSfv3gfs into HEAD commit 4d78478e98a4aa1e547dc714b9dd7b895f71f351 Merge: af03bb30 4c1b7e7b Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 16:10:13 2019 -0600 Merge pull request #250 from climbfuji/update_submodule_pointers_20190919 Update submodule pointers for FV3, ccpp-physics, ccpp-framework 2019/09/19 commit 4c1b7e7b99568e8e3d19c5727e6ba41b2c3ae2d7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 19 16:08:16 2019 -0600 Update submodule pointers for FV3, ccpp-physics, ccpp-framework commit af03bb30daac3be4b6aca41043612743f66d618c Merge: 80ff65a6 5aab0bee Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Sep 19 14:40:18 2019 -0600 Merge pull request #249 from climbfuji/myj_with_dom_mods gmtb/develop: MYJ PBL/SFC, Noah MP, Cheyenne modulefiles, cleanup rt*.conf commit 5aab0bee5e2952529cafb2191f0b8c6f53ea4f43 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:54:29 2019 -0600 Update submodule pointer for FMS and ccpp/physics commit 1d09c3b363c6c0ac05cabe4ce6ec2d4cc86499ae Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 18 13:49:09 2019 -0600 Bugfix for modulefiles/macosx.gnu/fv3 commit 04321dc32e522e2ece1ddd952c5771922b45ce6a Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:40:52 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit 2bc9874472eb499d7381a37782fbf3ac04af266b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Mon Sep 16 15:37:57 2019 -0600 ccpp/CMakeLists.txt: for GNU and REPRO mode, add -g to compiler options commit 9f5a6ca3be704d40d2473f5bb8017195dbd5d93e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 17:21:26 2019 -0600 Add hera.intel to rt_ccpp_caps.conf, rt_ccpp_gmtb.conf, rt_ccpp_gsd.conf commit a747a0687153c1e69f8a741bcbdbc67eff766943 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:45 2019 -0600 Update submodule pointers for FV3, ccpp-framework, ccpp-physics commit 9091411f3fe01d44701545ed75d0b5fc90c313b0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:43:24 2019 -0600 Update ESMF version for macOS and linux platforms commit f1c3c4a37351e7097505cfe5ca136e4b2d5e5d2e Merge: 1aedd2bb 80ff65a6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:41:38 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into myj_with_dom_mods commit 1aedd2bb06899f3c273fb151d54e6c9c0b2bf2d8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:25:52 2019 -0600 tests/rt_ccpp_gmtb.conf: formatting changes commit 80ff65a69a144127015aa1703a73dbc123df008e Merge: a6b70173 4183ee57 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 16:23:34 2019 -0600 Merge pull request #246 from climbfuji/gmtb_develop_metadata2html_batchconvert gmtb/develop: metadata2html batch processing commit 141f41e44c3977287808bb4d08f8adfeb2ecbcc1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:10:38 2019 -0600 Remove redundant regression test configurations commit 940b7d1a6de99438a9e5a33bab836dab52e8a0a6 Merge: 26acc72b 3c961fa0 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:08:26 2019 -0600 Merge branch 'noahmp' of https://github.com/grantfirl/NEMSfv3gfs into myj_with_dom_mods commit 26acc72b9c895c28f213a73aa17dbe4a953fdaab Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:01:40 2019 -0600 Combining CCPP GFDLMP namelist template with MYJ changes, add default values to tests/default_vars.sh Remove separate regression test config for MYJ, add to rt_ccpp_gmtb.conf commit abf19ed89d7d0a84840cfccf759d2cad7b8c5526 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 16:00:17 2019 -0600 modulefiles/cheyenne.*/fv3: update ESMF to 8.0.0bs48, use modules instead of setting environment variables manually commit 8a1cc14102eab44fdda81daaec0c0f6ba6a60a51 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 15:59:30 2019 -0600 ccpp/suites/suite_FV3_GFS_2017_myj.xml: update with stochastic_physics and UGWD changes commit 3c961fa0bcf21dc5e5020b1a326caf47c580c58b Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 13 14:52:04 2019 -0600 add noahmp tests to rt.conf and rt_ccpp_gmtb.conf commit db00f41e14c62aeadad503119e95f287562bd4d7 Merge: b34799b2 282ad6b6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Sep 13 10:46:04 2019 -0600 Merge branch 'myj_from_qingfu' into detect_machine_cheyenne_update_20190912 commit a6b701733c4b1571a8a54c12db2142b3b5f9b815 Merge: 079b0b14 b34799b2 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Sep 13 09:37:14 2019 -0600 Merge pull request #247 from climbfuji/detect_machine_cheyenne_update_20190912 gmtb/develop: update tests/detect_machine.sh for Cheyenne commit b34799b26f6c956adc313027ffd6c51204e19acb Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 21:17:03 2019 -0600 tests/detect_machine.sh: detect cheyenne with and without .ib. in hostname commit 4183ee576bfedea4fec85c72d3f0d8f26c2900e7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 15:38:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: remove outdated version number from comment commit 92d6056d8b90d98e3ae2ffca275d5767f634b449 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:45:09 2019 -0600 Update submodule pointer for ccpp/framework commit 25486e833de3d752824ef391474f939daf370ca4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 12 08:44:55 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new variable METADATA_HTML_OUTPUT_DIR required for metadata2html batch processing commit d5dff46bb109e9a9c4707941013db1e47f221760 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:42:35 2019 -0600 remove stochastic physics calls from suite_FV3_GFS_2017_gfdlmp_noahmp.xml commit d114de7b13be53593146c39cacf939affda4c56f Merge: 2c378470 079b0b14 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 10 17:38:07 2019 -0600 Merge branch 'gmtb/develop' into noahmp commit 079b0b14c8dabc0e510119de4be1ab0ec0c39dc2 Merge: c28e4020 20a8a674 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:44:52 2019 -0600 Merge pull request #245 from climbfuji/gmtb_develop_update_submodule_pointers_20190908 gmtb/develop: update submodule pointers 2019/09/08 commit 20a8a674fd496965423d07936039a355df1da0ff Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Sun Sep 8 20:42:53 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp-framework, ccpp-physics commit c28e4020d3616f8b2de6d42f7b15e49a34f6e8fa Merge: 5b120105 69b55a7c Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sun Sep 8 20:32:26 2019 -0600 Merge pull request #243 from climbfuji/gmtb_develop_monster_merge_20190904 Convert all schemes to new metadata, merge gsd/develop, update from Vlab, update of CCPP physics with IPD physics changes, GNU portability commit 2c378470a94f672d726a865ee67fc18e61e5e86c Author: Grant Firl <grantf@ucar.edu> Date: Fri Sep 6 15:13:34 2019 -0600 move calculation of precipitation rates for NoahMP to pre-NoahMP scheme rather than GFS_MP_generic_post for B4B testing commit 69b55a7c7c39ece01f97fef334012cbcc5a6e079 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Sep 5 21:48:25 2019 -0600 Update submodule pointer for ccpp/framework commit e67e618bb89dd396235e5dff186d11b458169b0b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 21:18:48 2019 -0600 Bugfix for GSD suites: replace gwdps_pre with GFS_GWD_generic_pre commit fadc80809693b39557f8ab4b75329bbf0106c519 Merge: 64f209ce 097468ca Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:45:51 2019 -0600 Merge pull request #244 from climbfuji/github_master_update_submodule_pointer_FV3_20190904 GitHub master: update submodule pointer for FV3 commit 097468ca99392eb208ee90039f3fc9b1e07ce903 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 16:44:20 2019 -0600 Update submodule pointer for FV3 commit 64f209cee5a7f364d5a93df27ad8e071f7f4682d Merge: 45b389ae 8fe8d004 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Wed Sep 4 16:41:54 2019 -0600 Merge pull request #242 from climbfuji/github_master_update_from_vlab_master_20190904 Update GitHub master from Vlab master 2019/09/04 commit a105b2c92f91557b74cf439740628cfbddbc845c Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:35 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit d5c4e5faa2994d2d75c48d27121ccb5bc46b9c9e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 15:41:18 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add new dependency ccpp/physics/physics/samfaerosols.F commit bd52519b589955ecf40e8e3dc2dfe6b087419210 Author: Grant Firl <grantf@ucar.edu> Date: Wed Sep 4 13:36:21 2019 -0600 add noahmp-specific rt.conf commit 7d142eb30608f14e8a2a7995f8f37bd8b52445af Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit da04e9ae8ecd7448732903b138ae29a675509b37 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:04:02 2019 -0600 ccpp/suites/suite_FV3_GFS_v15_gf.xml: fix merge conflict commit 3b81d224bdb9b33a7b5743a6c7f1bd836d46cb26 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 11:00:34 2019 -0600 ccpp/suites/*.xml: remove stochastic_physics and stochastic_physics_sfc schemes from new SDFs commit 3c247950ad1ddcfe34a3f9a53f53127309a5b3d1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:57:18 2019 -0600 Update submodule pointers for ccpp/framework and ccpp/physics commit 8fe8d0041c672b12da0e360f59ab2aa746efbef2 Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Sep 3 01:39:37 2019 +0000 NEMSfv3gfs: this commits #refs 67151, Add aerosol transport to SAMF deep convection scheme, #refs 67152, Export instantaneous convective specific humidity tendency Change-Id: Iaad6fd2aef539341bccec8665a790421a1794951 commit 7b9cd36b2d17dfbe7693b1669077c7a07b4b8342 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 10:11:08 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add sfc_cice scheme commit 79e5cd20c3b40effb990573a013e040b03ccb08b Merge: b9e05586 5ea40b23 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 09:18:44 2019 -0600 Merge branch 'gsd/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit b9e05586d33eac6902fb3e64d7646489c3b25fe1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:22:02 2019 -0600 modulefiles/macosx.gnu/fv3: improve setting compilers so that it works when MPIF90 etc are not set commit ceef678c966308e22ba2d08fd26a6526e6f4064b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Sep 4 08:18:39 2019 -0600 ccpp/config/ccpp_prebuild_config.py: add ccpp_types to converted metadata dictionary commit 0aafc0a34ed6649d8e54d058f96e83712162bbda Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:08:02 2019 -0600 update SDF using noahmp commit 99626b8c2da1a22d6abb9da32cc3fc9168614ba7 Merge: 235b712b 5b120105 Author: Grant Firl <grantf@ucar.edu> Date: Tue Sep 3 15:06:00 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into noahmp commit caa9037ab43b21fd727d1d030b4cef9ecab7f1d3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Wed Jul 10 08:05:30 2019 -0600 compsets/fv3.input: set variables DO_SPPT, DO_SHUM, DO_SKEB, DO_SFCPERTS for fv3_stochy test commit bf8c2ded4b6779c9e1446507057f38a384b98167 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:33:37 2019 -0600 parm/input.nml.IN, tests/tests/fv3_stochy: add new namelist options do_sppt, do_shum, do_skeb, do_sfcperts to namelist template, set for fv3_stochy test commit 85b7a7a2c32a19971ac89255f9b9d595829902a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:31:48 2019 -0600 ccpp/config/ccpp_prebuild_config.py, ccpp/suites/*: remove stochastic physics from CCPP config and suite definition files commit d33df0427b1d6df35ff92edcab2e152d08499f15 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Jul 9 14:30:55 2019 -0600 Add new submodule stochastic_physics, located in directory with same name commit c061af4a2d8f1a8318ca40aacdfb25ccec353f15 Merge: 2483ed32 5b120105 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 09:22:32 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into gaea_update_stochastic_physics_metadata_conversion commit 5b1201056ec3187c04f7edb9d8afaac2465b4e9b Merge: 0ab90a12 fd7d0f1e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 09:19:54 2019 -0600 Merge pull request #239 from climbfuji/gmtb_develop_update_from_master_20190830 gmtb/develop: update from master 2019/08/30 commit 2483ed324e53de72fa67de24cb1d04d492b1c862 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:31:04 2019 -0600 ccpp/build_ccpp.sh modulefiles/gaea.intel/fv3: update for gaea following wcoss_cray to avoid setting NETCDF and HDF5 in modulefile commit 45b389ae0e2fea91bb71edcceef481601827a5c5 Merge: 257f2a2e ce0c61f6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Sep 3 08:23:51 2019 -0600 Merge pull request #240 from climbfuji/update_submodule_pointer_in_NEMSfv3gfs_20190903 master: update submodule pointers for FV3, NEMS, WW3 commit ce0c61f644c95afc7f8dfa49ce6678d40356f54b Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Sep 3 08:22:21 2019 -0600 Update submodule pointers for FV3, NEMS, WW3 commit 257f2a2eec6f9ca902c4a2aac9fd312f24470d9b Merge: a1a54d1f 95583de5 Author: Laurie Carson <carson@ucar.edu> Date: Mon Sep 2 14:15:08 2019 -0600 Merge pull request #238 from climbfuji/update_from_noaaemc_dev_20190830 Update GitHub NCAR master from Vlab master commit fd7d0f1e022c60a010691a51dbc866b82a48c1c1 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:43:28 2019 -0600 Update submodule pointer for ccpp-physics commit 15c64a190aa7af38dce3a9154d7bae9bbe1e381c Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit 50962a88c93b90930d747e1e007f10c21b042fdb Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 5f481c8f5a36a2c0ae56dd02645bd5ec591dcc6f Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 15:33:53 2019 -0600 Update .gitmodules to point to NCAR repro and branch gmtb/develop for new submodule WW3, update submodule pointer commit 872693bea7e160edb478b05cfb68e96e3671ec8c Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 95583de5ce6c4cbb83abe35b969476ba88628cca Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 11:29:32 2019 -0600 Add default branch develop for WW3 and update submodule pointer commit a2fc15ec2140ef5b5e80dc4bd4b2d88430a9d59d Author: Jun Wang <jun.wang@noaa.gov> Date: Tue Aug 27 20:23:05 2019 +0000 NEMSfv3gfs: this commits #refs 66699, Calling radiative transfer parameterizations on each physics time step, #refs 66931,fix time window for accumulated fields in fv3 with IAU, #refs 62918,output omega field in fv3 history file and #65894,add WW3 component in NEMSfv3gfs(part2) Change-Id: I85286a530943fe67839e1afe2c94653faba27b2d commit c15a5f76e78c08c68e3afb0d5e5194f55dcdd855 Author: Jun Wang <jun.wang@noaa.gov> Date: Sun Aug 25 02:56:05 2019 +0000 NEMSfv3gfs: this commits #refs 59519, separate FV3 dynamical core repository from FV3 Change-Id: I0f7ba54ca67ef6aeef0d529b3005f3fef7bc3aa9 commit 100dc801cb2901618f778720c6ad4426070ce4c7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 10:17:47 2019 -0600 Update .gitmodules so that WW3 points to the NCAR repository commit 25aa6fe7d55240903a132fc81dd9fb9b8aca0631 Author: Jessica.Meixner <Jessica.Meixner@noaa.gov> Date: Tue Aug 20 12:10:34 2019 +0000 NEMSfv3gfs: this commit refs #65894, adding WW3 commit 0ab90a125b63b89d29bb73e0f640000b6c5b74a0 Merge: cee7b3fe b77f1471 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:42:51 2019 -0600 Merge pull request #237 from climbfuji/gmtb_develop_update_submodule_pointers_20190830_1 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit b77f14719ac17b564f85d69383c99b8b161de817 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 30 07:40:55 2019 -0600 Update submodule pointers for FV3, NEMS, ccpp/framework, ccpp/physics commit cee7b3fe354e07a29dbc9fa49235d909f4cf528a Merge: f4671a1c d02d0c16 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Aug 30 07:39:01 2019 -0600 Merge pull request #234 from climbfuji/bugfix_rt_conf gmtb/develop: bugfix for rt.conf commit a1a54d1f5159aa927ac4d4b01abaa6548040ff52 Merge: 8a1e235d ed0c436a Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 15:32:08 2019 -0600 Merge pull request #236 from grantfirl/master add Julie as codeowner commit ed0c436ad2aa1c52a6a6a5fa1ca7a9fc210956d3 Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 15:00:06 2019 -0600 add Julie as codeowner commit f4671a1c9f394609f33e0f04a893ab1a8147f8bb Merge: ea22d467 a667940f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Thu Aug 29 14:58:30 2019 -0600 Merge pull request #235 from grantfirl/gmtb/develop add Julie as codeowner commit a667940f9cfff12e41cb5134f86e66babc76081f Author: Grant Firl <grantf@ucar.edu> Date: Thu Aug 29 14:52:42 2019 -0600 add Julie as codeowner commit d02d0c1679ffd3b57b2d2d049f86efdc531b51fd Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:47 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 65238966d6c574b314bc1b0e487e59f78d9b5552 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Thu Aug 29 08:06:02 2019 -0600 tests/rt.conf: bugfix, correct name of suite FV3_GFS_2017_gfdlmprad_gwd to FV3_GFS_2017_gfdlmp_gwd commit 282ad6b657ff250eefba8092975b484681479d8a Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:53:24 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 29993a06e32ea08b588bed93d7e088ea386daf7c Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Wed Aug 28 19:49:13 2019 +0000 correct file content tests/tests/fv3_ccpp_gfs_myj commit 5ea40b233539ed0b8a86d8ef54ed59cba4c89621 Merge: e06da970 01f6a0f8 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:40:43 2019 -0600 Merge pull request #232 from climbfuji/gsd_develop_update_submodule_pointers_20190827 gsd/develop: update submodule pointers for FV3 and ccpp/physics commit 01f6a0f87727751a8252a576bceed7bc5b9729a7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:39:04 2019 -0600 Update submodule pointers for FV3 and ccpp/physics commit ea22d467cb4e6289768ca625133f68d803cc4772 Merge: 8ba3d4ae 3150c4b4 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 16:32:58 2019 -0600 Merge pull request #231 from climbfuji/update_submodule_pointers_gmtb_develop_20190827 gmtb/develop: update submodule pointers for FV3, NEMS, ccpp/physics commit 3150c4b432ac93119c578a1d0cb12a7b0e1e3fd6 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 16:30:38 2019 -0600 Update submodule pointers for FV3 NEMS ccpp/physics commit 8ba3d4ae5bfd786895d54c26f398821d28601821 Merge: 6aba4551 f91d7846 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 15:45:47 2019 -0600 Merge pull request #230 from climbfuji/hera_update_20190827 gmtb/develop: update hera config, enable regression testing commit f91d78461f1608bfdbe1de0d38a9527f8381cea7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 15:04:42 2019 -0600 Update submodule pointer for NEMS commit 235b712ba15d59c4d56aa990d3a9edeb30999496 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 15:40:00 2019 -0600 add CCPP-based NoahMP test to RTs for rt_ccpp_gmtb.conf (plus new SDF based on suite_FV3_GFS_2017_gfdlmp.xml) commit e74e0d2ebd6430e39c2f869c7241be858776f385 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:55 2019 -0600 Update submodule pointer for NEMS commit 290a484f1e3be763aced44c2dfd099c6d832ce2e Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:53:33 2019 -0600 rt_hera_test.conf: temporary regression test config for testing on hera commit c52d27b0d8e99029d1e723ecde07d3ba0813da09 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:52:20 2019 -0600 tests/rt.sh: enable regression testing with rt.sh, changes from Ratko, update STMP and PTMP for GMTB commit 6b9508c93f81383418ad1b779ce8d4bc2358aba4 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:48:01 2019 -0600 modulefiles/hera.intel/fv3: update path to modules following transition from Juno test system to hera commit eb229d3cb145a7811d69348cb2167fbd5a5a097d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 13:47:33 2019 -0600 ccpp/build_ccpp.sh and conf/configure.fv3.hera.intel: don't use the AVX512 flags yet on hera commit 6aba455146a4a8d4629704e5226570116091691f Merge: 5c289838 75b5715e Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:17:17 2019 -0600 Merge pull request #229 from climbfuji/gmtb_develop_update_submodule_20190827 gmtb/develop: update submodule pointers for FV3, ccpp-physics, ccpp-framework commit 75b5715e41c6f978defaa04e38d41b8d20326488 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Tue Aug 27 07:15:40 2019 -0600 Update submodule pointer for FV3, ccpp-physics, ccpp-framework commit 5c289838c1bc9d443319e4cdad4b23df5215fc77 Merge: eb7b7ae8 48000a93 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Aug 27 07:13:20 2019 -0600 Merge pull request #218 from bluefinweiwei/cires_ugwp UGWP Version 0 commit 51299cadc6514199225605df04246e54446d6486 Author: Qingfu Liu <Qingfu.Liu@noaa.gov> Date: Tue Aug 27 11:03:43 2019 +0000 add MYJ surface layer scheme and MYJ PBL scheme to CCPP commit 75596f60b0d684413cf8a6f42567cd92195b3661 Author: Grant Firl <grantf@ucar.edu> Date: Mon Aug 26 13:34:15 2019 -0600 remove noahmp_pre.F90 from CCPP config since code was moved to existing interstitial scheme commit d913c69b7e11b23f5666c4f8432a6e0c80fe7036 Author: Grant Firl <grantf@ucar.edu> Date: Fri Aug 23 18:04:07 2019 -0600 remove module_wrf_utl.f90 from ccpp_prebuild_config scheme dependency list commit 48000a93dfd9b07159d3d006016c854e14a20886 Merge: 266c9885 e38eda36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:53:36 2019 -0600 Merge pull request #3 from climbfuji/ugwd_dom Delete tests/rt_with_ugwp.conf commit e38eda36b8d1d7181400059c3d7cc1af3511534d Merge: 789ab6bc 266c9885 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:50:02 2019 -0600 Merge branch 'cires_ugwp' of https://github.com/bluefinweiwei/NEMSfv3gfs into ugwd_dom commit 789ab6bc2ae4e04cdeaa580abbb0cbcf0c4d9cb7 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 13:48:59 2019 -0600 Delete tests/rt_with_ugwp.conf commit 266c9885f97153154fa6caaaf0bbac87addda38b Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:47:39 2019 -0600 Delete rt_ugwp_only.conf Removed. commit b27a08aa3d2544024a0fb6adf0a38d339ac3a18c Merge: 5ffd3ed8 adc9df36 Author: Weiwei <42526954+bluefinweiwei@users.noreply.github.com> Date: Fri Aug 23 13:22:27 2019 -0600 Merge pull request #2 from climbfuji/ugwd_dom UGWD update for open PR to gmtb/develop commit adc9df36fbe5a866bcab77f709d368286d2a496d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 11:59:13 2019 -0600 Update submodule pointers commit 4410e285d4f0a99a68f2da799fa8d9d117e8ef1a Merge: 1499c32c eb7b7ae8 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:34:58 2019 -0600 Merge branch 'gmtb/develop' of https://github.com/NCAR/NEMSfv3gfs into ugwd_dom commit 1499c32c862f4471a72c85204208d01c847f8d2d Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:11:39 2019 -0600 Update submodule pointers for FV3, ccpp/framework, ccpp/physics commit 7ae19849e6a6365adab0642e674a3e16b04cbbf3 Author: Dom Heinzeller <dom.heinzeller@noaa.gov> Date: Fri Aug 23 09:10:02 2019 -0600 ccpp/suites/*: rename gwdps_pre to…

update

remove FoX dependency building and use ESMF Config instead. Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com>

* point to Jun fv3atm personal fork * add CDEPS submodule * add building instructions * fix issues that came from building * builds CDEPS targets * missed w3nco dep * cleanup use of FoX and remove redundant library links in components * Add 3 files generated by genf90.pl to the CDEPS-interface/ufs directory. (#1) * remove dependency on genf90.pl for CDEPS/share * remove FoX (#2) remove FoX dependency building and use ESMF Config instead. Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com> Co-authored-by: BinLi-NOAA <bin.li@noaa.gov> Co-authored-by: Brian Curtis <brian.curtis@noaa.gov>

Upstream update 10/1/2020

VLab Issue #68141

update noaa-psd fork with EMC develop branch

- bugfix for GNU compiler - reduce noise in stdout Squashed commit of the following: commit 86c127f5b810b87004aeed3a625f9445d469c27e Merge: ce66d6a f9bbb4f Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Apr 10 11:32:21 2020 -0600 Merge pull request ufs-community#11 from climbfuji/update_dtc_develop_from_dev_emc_20200409 Update dtc/develop from dev/emc 2020/04/09 commit f9bbb4f12e032378050cef4b7e5ac4b65a16bb70 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 20:14:24 2020 -0600 Bugfix for GNU compiler in model/fv_regional_bc.F90, reduce verbosity in driver/fvGFS/atmosphere.F90 commit ecca9978802ec9cc39dc114fd7363386f7ad9422 Merge: ce66d6a 80ce8ce Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Apr 9 09:38:48 2020 -0600 Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD commit ce66d6a56e89b6330a2bef763755c7154047d829 Merge: 4279bf7 9bacf55 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Mar 13 13:00:41 2020 -0600 Merge pull request ufs-community#10 from climbfuji/update_from_dev_emc_20200312_and_other_changes Update from dev/emc 2020/03/12 commit 9bacf554ed078dfa8c09ee662e7608442288e2d5 Merge: 4279bf7 371a29a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Thu Mar 12 10:33:44 2020 -0600 Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD commit 4279bf78eb4ae0bad908eb991e3fb216018b7aea Merge: 846f5a5 4858d33 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Mar 9 12:41:51 2020 -0600 Merge pull request ufs-community#9 from climbfuji/update_dtc_develop_from_emc Update dtc/develop from dev/emc 2020/03/04 commit 4858d33838adcd87c1cd000ab4737dc0e7e56731 Merge: 846f5a5 db3acfb Author: Dom Heinzeller <climbfuji@ymail.com> Date: Fri Feb 28 08:46:55 2020 -0700 Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD commit 846f5a54b0764db1478c9aca49a74bd38322d9ad Merge: 3a4dfd8 9a290ee Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Feb 3 07:43:08 2020 -0700 Merge pull request ufs-community#7 from climbfuji/update_dtc_develop_from_dev-emc dtc/develop: update from dev/emc 2020/01/27 commit 9a290ee5f3307a9d7b02762fe6c29a1f5ccd7f55 Merge: 3a4dfd8 a56907a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Jan 27 09:28:57 2020 -0700 Merge branch 'dev/emc' of https://github.com/noaa-emc/GFDL_atmos_cubed_sphere into HEAD commit 3a4dfd8c6c4ceb8cec06397f25cb229ecd98065b Merge: 0c9ab9e 68576a6 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Tue Dec 3 15:19:24 2019 -0700 Merge pull request ufs-community#6 from climbfuji/dtc_develop_udpate_from_emc_20191127 dtc/develop: update from EMC 2019/11/27 commit 68576a61f2a57236931e5ef1b8bd73a4256b0a5f Merge: 0c9ab9e 452333a Author: Dom Heinzeller <climbfuji@ymail.com> Date: Wed Nov 27 14:13:08 2019 -0700 Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD commit 0c9ab9e3dfe6cda6fc78315b86a107a369756024 Merge: 9871607 b280b37 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Fri Nov 22 16:17:57 2019 -0700 Merge pull request ufs-community#5 from mzhangw/HAFS_fer_hires minimal changes to make nwat =4 compatible with Ferrier-Aligo MP scheme commit b280b373b421fcb9d84bd1196a40ec56fcf279ff Author: Man.Zhang <Man.Zhang@noaa.gov> Date: Tue Nov 19 14:53:57 2019 -0700 bug fix commit 98c58ad3d0444859aae54c31bc2b86ba30b4a9ac Author: Man.Zhang <Man.Zhang@noaa.gov> Date: Tue Nov 19 14:35:10 2019 -0700 bug fix commit 8805acd93152bb76d5c4d0900f314631f549fbe2 Author: Man.Zhang <Man.Zhang@noaa.gov> Date: Tue Nov 19 14:16:22 2019 -0700 From Chunxi: The file fv_mapz.F90 also needs to be modified (K_warm) commit f8a257a922a9047e98c176affec054e2a4d9c6a9 Author: Man.Zhang <Man.Zhang@noaa.gov> Date: Thu Nov 14 19:12:39 2019 -0700 use upper-case CCPP commit 77f4fbad9311ad406c6486ad0912069de3085f07 Author: Man.Zhang <Man.Zhang@noaa.gov> Date: Thu Nov 14 13:40:59 2019 -0700 implement FA scheme water loading option if nwat =4 commit 987160799b3a1c0f11de9883843f20421eb03fe8 Merge: ed75004 786447c Author: Dom Heinzeller <climbfuji@ymail.com> Date: Tue Nov 5 06:59:34 2019 +0900 Merge branch 'dev/emc' of https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere into HEAD commit ed75004634374b02f8b222dd873190a91126ce4f Merge: 1d6035a f627bfb Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Sat Oct 12 08:45:14 2019 +0900 Merge pull request ufs-community#4 from climbfuji/update_gmtb_develop_with_vlab_master_20191006 Update NCAR gmtb/develop with NOAA-EMC dev/emc 2019/10/06 commit f627bfb177dc1f2d0bd10371540c43c51ce8eec4 Author: Dom Heinzeller <climbfuji@ymail.com> Date: Mon Oct 7 12:12:24 2019 +0900 Add missing change in fv_cmp.F90 - now identical with EMC code commit e868186fd7d64fc2eeb7ec2c59e88c889e62fc93 Author: Dusan Jovic <dusan.jovic@noaa.gov> Date: Tue Sep 24 01:57:11 2019 +0000 change delz from positive value to the original value in the model commit 672eb0e8d67c008437724681250e7aa8aa81ec31 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Sep 5 19:24:09 2019 +0000 VLab Issue #68141 modified: docs/FV3_citations.bib modified: model/fv_cmp.F90 1) Add an option (namelist parameter: intqs) to use temperature instead of the liquid frozen temperature to calculate saturation mixing ratio in deriving GFDLMP PDF cloud cover. 2) Add a literature reference. commit 1d6035ab053a6b5257b32dd9b4a49faa7ee4c78d Merge: 94ab0e1 fec8205 Author: Dom Heinzeller <dom.heinzeller@icloud.com> Date: Mon Sep 23 09:32:55 2019 -0600 Merge pull request ufs-community#2 from climbfuji/remove_transition_mode Remove TRANSITION mode commit fec8205b9418dea28de4e2c9f05f347f3cf460d2 Author: climbfuji <dom.heinzeller@icloud.com> Date: Fri Sep 20 08:52:01 2019 -0600 Remove TRANSITION mode commit 94ab0e1317ffa50279dd6269a462999a2bea15e7 Author: Jun.Wang <Jun.Wang@noaa.gov> Date: Mon Aug 26 21:03:55 2019 +0000 add option to output omega commit b700cae673038f82189a1e6e0cb48a10a58ea726 Author: climbfuji <dom.heinzeller@icloud.com> Date: Fri Aug 30 11:58:00 2019 -0600 model/fv_dynamics.F90: replicating previous change to gmtb/develop branch of FV3, always allocate dtdt_m for IPD version commit 3df11713e0ba9299d95512476a9ee784048629c9 Author: Laurie Carson <carson@ucar.edu> Date: Fri Aug 16 10:46:56 2019 -0600 Add codeowners for NCAR fork

* Adopt progsigma "Add prognostic cumulus closure description in saSAS ufs-community#1187" https://github.com/ufs-community/ufs-weather-model/pull/1187/files modified: FV3 modified: tests/default_vars.sh modified: tests/opnReqTests/dcp.sh modified: tests/parm/control.nml.IN new file: tests/parm/field_table/field_table_gfsv16_progsigma * modified: .gitmodules

…to make the process more flexible, as follows: 1) Rename the module files for several tasks (only for hera thus far) from ${filename} to ${filename}.hardcoded. These are for backup and will be removed once it is clear that the "dynamic" modulefile method (see #2 below) is working reliably. 2) Put in code in the experiment/workflow generation scripts that create links to "dynamic" versions of these files in the external repos. These are dynamic in the sense that they should be compatible with the version of code in the repository. This will (hopefully!) eliminate the need to maintain hard-coded module files in the workflow repository (at least for codes that are external to the repository). 3) Modify the load_modules_run_task.sh script so that some of the "dynamic" module files are sourced like a shells script instead of being loaded using "module load ...". This is because this subset of "dynamic" module files are in fact shell scripts because they contain shell commands (like "export ${SOME_VARIABLE}"). These module files need to be fixed in the external repos (notably in the UFS_UTILS repository) so that they are true Lua module files.

@JeffBeck-NOAA

* Fix to post flat file. * Create MET and METplus config files under ush/templates/parm * Added script to pull and reorg ccpa data. Added a script to run gridstat with METplus. Updated MET and METplus config files. * Added new jjob for running grid-stat vx. Updated setup.sh to include grid-stat vx. Updated run_gridstatvx script. * Fixed typo on script name from ksh to sh * Moved some hard coded items out from the script to the XML * Updates to get METplus to run with fewer hard-coded paths. * Updates to add grid-stat task to XML generation. * Bug fixes for adding grid-stat to XML generation * Updates to remove hard-coded paths in config files * Change log dir to put master_metplus log file with other logs under log/, rather than default logs/. * Updates to generate xml without hard-coded paths for MET * Add hera gridstat module file * Add METplus point-stat task for both sfc and upper air * Small tweaks to remove hard coded paths and add some flexibility * Updates for adding point-stat into auto-generated xml * Add in function to set point-stat task to FALSE * Final tweaks to get it to generate the xml correctly * Minor updates to run ensure 0,6,12,18 * Tweaks to var list for Point-Stat * Add METplus settings to config_defaults * Move quote for end of settings and fix extra comment. * Fix typos to populate templates correctly * Updated to include SCRIPTSDIR and other MET specific settings along with updates to FHR syntax * Update module loads on hera * Fixed comment for BOTH_VARn_THRESH to avoid syntax issues * Added files to run grid_stat for a variety of accumulation intervals, including 3, 6, and 24h * Added module load hpss * Remove module load informatino from these scripts * Updated the method of turning on/off vx tasks using jinja template if statement * Remove commented out lines of code. Fixed typo. Removed gen_wflow.out file. * Updated pull scripts to have file names dependent on date to pull from HPSS. Updated to export a few more local variables that METplus conf needed in scripts. Updated workflow to use service queue (for now) to for 1h grid_stat and point_stat run and default for 3+h accumulation grid_stat runs) * moved common_hera.conf to common.conf - no platform specific information included that needs to be handled. * Remove common_hera.conf * Add scripts to pull and process MRMS data from NOAA HPSS * Updates for REFC vx tasks * updates to obs pull scripts * Update for adding in reflectivity verification using MRMS analyses and updating name of model output to RRFS rather than HRRR * Updates to account for CCPA issues on HPSS - day off for 00-05 UTC directories * Verification mods to feature/add metplus (#1) * Remove unused/outdated code (#313) ## DESCRIPTION OF CHANGES: * In setup.sh and generate_FV3LAM_wflow.sh, remove temporary codes that fix bugs in the FV3_GFS_2017_gfdlmp_regional suite definition file because those bugs have been fixed (in the ufs-weather-model repo). * In setup.sh, remove block of code that is no longer necessary because chgres_cube can now initialize from external model data with either 4 or 9 soil levels, and run with LSMs of either 4 or 9 soil levels. * Remove modifications to LD_LIBRARY_PATH in exregional_run_fcst.sh. * For the make_ics and make_lbcs tasks, move the setting of APRUN and other machine-specific actions from the J-job to the ex-script in order to be consistent with the other workflow tasks. * Fix indentation and edit comments. * Remove unused file load_fv3gfs_modules.sh. ## TESTS CONDUCTED: Ran two WE2E tests on hera, new_ESGgrid and new_GFDLgrid: * new_ESGgrid uses the FV3_GFS_2017_gfdlmp_regional suite. The test was successful. * new_GFDLgrid uses the FV3_GFS_2017_gfdlmp suite. The test was successful. ## ISSUE (optional): This resolves issue #198. * Add and call a function that checks for use of Thompson microphysics parameterization in the SDF and if so, adjusts certain workflow arrays to contain the names and other associated values of the fixed files needed by this parameterization so that those files are automatically copied and/or linked to. (#319) ## DESCRIPTION OF CHANGES: Add and call a function that checks for use of Thompson microphysics parameterization in the suite definition file (SDF). If not, do nothing. If so, add to the appropriate workflow arrays the names and other associated values of the fixed files needed by this parameterization so that they are automatically copied and/or linked to instead of being regenerated from scratch in the run_fcst task. ## TESTS CONDUCTED: On hera, ran two WE2E tests, one in NCO mode (nco_RRFS_CONUS_25km_HRRRX_RAPX) and the other in community mode (suite_FV3_GSD_v0). These use suites FV3_GSD_SAR and FV3_GSD_v0, respectively, and both of these call Thompson microphysics. Both succeeded. ## ISSUE (optional): This PR resolves issue #297. * RRFS_v1beta SDF changes after reverting from GSL to GFS GWD suite (#322) (#327) ## DESCRIPTION OF CHANGES: Removed checks on the RRFS_v1beta SDF implemented for use with the GSL GWD suite (now uses the GFS GWD suite). No longer copies staged orography files necessary for the GSL GWD suite. ## TESTS CONDUCTED: Runs to completion on Hera. End-to-end runs DOT_OR_USCORE and suite_FV3_RRFS_v1beta succeeded on Cheyenne. Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> * Update FV3.input.nml for fhzero = 1.0 * Updated conf files for file name conventions. * Updated MET scripts and MRMS pull scripts. * Adjust RRFS_CONUS_... grids (#294) ## DESCRIPTION OF CHANGES: * Adjust RRFS_CONUS_25km, RRFS_CONUS_13km, and RRFS_CONUS_3km grid parameters so that: * All grids, including their 4-cell-wide halos, lie completely within the HRRRX domain. * All grids have dimensions nx and ny that factor "nicely", i.e. they don't have factors greather than 7. * The write-component grids corresponding to these three native grids cover as much of the native grids as possible without going outside of the native grid boundaries. The updated NCL scripts (see below) were used to generate the write-component grid parameters. * For the RRFS_CONUS_13km grid, reduce the time step (DT_ATMOS) from 180sec to 45sec. This is necessary to get a successful forecast with the GSD_SAR suite, and thus likely also the RRFS_v1beta suite. * Modify WE2E testing system as follows: * Add new tests with the RRFS_CONUS_25km, RRFS_CONUS_13km, and RRFS_CONUS_3km grids that use the GFS_v15p2 and RRFS_v1beta suites (which are now the ones officially supported in the first release of the short-range weather app) instead of the GFS_v16beta and GSD_SAR suites, respectively. * For clarity, rename the test configuration files that use the GFS_v16beta and GSD_SAR suites so they include the suite name. * Update list of WE2E tests (baselines_list.txt). * Update the NCL plotting scripts to be able to plot grids with the latest version of the workflow. ## TESTS CONDUCTED: On hera, ran tests with all three grids with the GFS_v15p2 and RRFS_v1beta suites (a total of 6 tests). All were successful. * Remove redundant model_configure.${CCPP_PHYS_SUITE} template files; use Jinja2 to create model_configure (#321) ## DESCRIPTION OF CHANGES: * Remove model_configure template files whose names depend on the physics suite, i.e. files with names of the form model_configure.${CCPP_PHYS_SUITE}. Only a single template file is needed because the contents of the model_configure file are not suite dependent. This leaves just one template file (named model_configure). * Change the function create_model_configure_file.sh and the template file model_configure so they use jinja2 instead of sed to replace placeholder values. * Absorb the contents of the write-component template files wrtcmp_lambert_conformal, wrtcmp_regional_latlon, and wrtcmp_rotated_latlon into the new jinja2-compliant model_configure file. We can do this because Jinja2 allows use of if-statements in the template file. * In the new model_configure jinja2 template file, include comments to explain the various write-component parameters. ## TESTS CONDUCTED: On Hera, ran the two WE2E tests new_ESGgrid and new_GFDLgrid. The first uses a "lambert_conformal" type of write-component grid, and the second uses a "rotated_latlon" type of write-component grid. (The write-component also allows "regional_latlon" type grids, which is just the usual earth-relative latlon coordinate system, but we do not have any cases that use that.) Both tests succeeded. ## ISSUE (optional): This PR resolves issue #281. * Add Thompson ice- and water-friendly aerosol climo file support (#332) * Add if statement in set_thompson_mp_fix_files.sh to source Thompson climo file when using a combination of a Thompson-based SDF and non-RAP/HRRR external model data * Modify if statement based on external models for Thompson climo file * Remove workflow variable EMC_GRID_NAME (#333) ## DESCRIPTION OF CHANGES: * Remove the workflow variable EMC_GRID_NAME. Henceforth, PREDEF_GRID_NAME is the only variable that can be used to set the name of the predefined grid to use. * Make appropriate change of variable name (EMC_GRID_NAME --> PREDEF_GRID_NAME) in the WE2E test configuration files. * Change anywhere the "conus" and "conus_c96" grids are specified to "EMC_CONUS_3km" and "EMC_CONUS_coarse", respectively. * Rename WE2E test configuration files with names containing the strings "conus" and "conus_c96" by replacing these strings with "EMC_CONUS_3km" and "EMC_CONUS_coarse", respectively. * Update the list of WE2E test names (tests/baselines_list.txt). * Bug fixes not directly related to grids: * In config.nco.sh, remove settings of QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST since these are now set automatically (due to another PR). * In the template file FV3LAM_wflow.xml, add the ensemble member name after RUN_FCST_TN in the dependency of the run_post metatask. ## TESTS CONDUCTED: Since this change only affects runs in NCO mode, the following NCO-mode WE2E tests were rerun on hera, all successfully: ``` nco_EMC_CONUS_3km SUCCESS nco_EMC_CONUS_coarse SUCCESS nco_EMC_CONUS_coarse__suite_FV3_GFS_2017_gfdlmp SUCCESS nco_RRFS_CONUS_25km_HRRRX_RAPX SUCCESS nco_RRFS_CONUS_3km_FV3GFS_FV3GFS SUCCESS nco_RRFS_CONUS_3km_HRRRX_RAPX SUCCESS nco_ensemble SUCCESS ``` * Port workflow to Orion (#309) ## DESCRIPTION OF CHANGES: * Add stanzas for Orion where necessary. * Add new module files for Orion. * On Orion, both the slurm partition and the slurm QOS need to be specified in the rocoto XML in order to be able to have wall times longer than 30 mins (the partition needs to be specified because it is by default "debug", which has a limit of 30 mins). Thus, introduce modifications to more easily specify slurm partitions: * Remove the workflow variables QUEUE_DEFAULT_TAG, QUEUE_HPSS_TAG, and QUEUE_FCST_TAG that are currently used to determine whether QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST specify the names of queue/QOS's or slurm partitions. * Add the workflow variables PARTITION_DEFAULT_TAG, PARTITION_HPSS_TAG, and PARTITION_FCST_TAG. These will be used to specify slurm partitions only, and the variables QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST will be used to specify queues/QOS's only. IMPORTANT NOTE: On Orion, in order to load the regional_workflow environment needed for generating an experiment, the user must first issue the following commands: ``` module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles module load miniconda3 conda activate regional_workflow ``` ## TESTS CONDUCTED: Ran 11 WE2E tests on Orion, Hera, and Cheyenne. Results on Orion: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km FAILURE - In the run_fcst task. * Error message: !!! (1) Error in subr radiation_aerosols: unrealistic surface pressure = 1 NaN new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` Results on Hera: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km SUCCESS new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` Results on Cheyenne: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km FAILURE - In run_fcst task. * Error message: !!! (1) Error in subr radiation_aerosols: unrealistic surface pressure = 1 NaN new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` All succeed except GSD_HRRR_AK_50km on Orion and Cheyenne. It is not clear why grid_GSD_HRRR_AK_50km fails on Orion and Cheyenne but not Hera. Seems to point to a bug in the forecast model. These two failures are not so important since this grid will soon be deprecated. Also tested successfully on Jet by @JeffBeck-NOAA and on Odin and Stampede by @ywangwof. ## ISSUE: This resolves Issue #152. ## CONTRIBUTORS: @JeffBeck-NOAA @ywangwof @christinaholtNOAA * Removed comments from exregional_get_mrms_files.sh and removed fhzero from FV3.input.yml * Update FV3.input.nml for fhzero = 1.0 * Updated conf files for file name conventions. * Updated MET scripts and MRMS pull scripts. * Removed comments from exregional_get_mrms_files.sh and removed fhzero from FV3.input.yml Co-authored-by: gsketefian <31046882+gsketefian@users.noreply.github.com> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> Co-authored-by: Jamie Wolff <jwolff@ucar.edu> * Change cov_thresh for REFL to be a true max in nbrhood as SPC does. * Separated Pull Data Scripts from Run Vx Scripts: Feature/add_metplus (#2) * Job script for get_obs_ccpa * Jobs script for get_obs_mrms * Jobs script for get_obs_ndas * Added external variables necessary to get_ccpa script * Updated workflow template with separate get obs tasks * Separated pull scripts from run scripts * Added necessary defaults/values for defining pull tasks * Added module files, default config.sh options, and changed dependencies for vx tasks * Changed name of new workflow to FV3LAM_wflow.xml * Added task get_obs_tn, removed config.sh, updated config_defaults and config.community.sh * Adjusted the community and default config files based on comments * Updated FV3LAM workflow * Fixed discrepancies in config.community.sh * Fixed discrepancies in config_defaults.sh * Fixed discrepancies in config_defaults.sh round 2 * Fixed discrepancies in config_defaults.sh round 3 * Fixed discrepancies in config_defaults.sh round 4 * Fixed discrepancies in config.community.sh round 2 * Fixed discrepancies in config.community.sh round 3 * Fixed discrepancies in generate_FV3LAM_wflow.sh * Fixed discrepancies in generate_FV3LAM_wflow.sh round 2 * Fixed discrepancies in generate_FV3LAM_wflow.sh round 3 * Updated FV3LAM_wflow template * Fixed Vx Task Dependencies in Workflow: Feature/add metplus (#3) * Job script for get_obs_ccpa * Jobs script for get_obs_mrms * Jobs script for get_obs_ndas * Added external variables necessary to get_ccpa script * Updated workflow template with separate get obs tasks * Separated pull scripts from run scripts * Added necessary defaults/values for defining pull tasks * Added module files, default config.sh options, and changed dependencies for vx tasks * Changed name of new workflow to FV3LAM_wflow.xml * Added task get_obs_tn, removed config.sh, updated config_defaults and config.community.sh * Adjusted the community and default config files based on comments * Updated FV3LAM workflow * Fixed discrepancies in config.community.sh * Fixed discrepancies in config_defaults.sh * Fixed discrepancies in config_defaults.sh round 2 * Fixed discrepancies in config_defaults.sh round 3 * Fixed discrepancies in config_defaults.sh round 4 * Fixed discrepancies in config.community.sh round 2 * Fixed discrepancies in config.community.sh round 3 * Fixed discrepancies in generate_FV3LAM_wflow.sh * Fixed discrepancies in generate_FV3LAM_wflow.sh round 2 * Fixed discrepancies in generate_FV3LAM_wflow.sh round 3 * Updated FV3LAM_wflow template * Fixed the dependencies of the vx tasks * Manual merge with develop that didn't seem to work before. Trying to get feature branch updated so it will run again! * Add local module files * Add environment variable for SCRIPTSDIR * Remove echo statement * Remove old module files * Update to config_default for walltime for ndas pull. Update to metplus parm for obs file template. Update to FV3LAM xml to not include 00 hour for verification * Update template to remove full path * Verification channges for obs. (#4) * Verification channges for obs. * Update config_defaults.sh for vx description * Update config_defaults.sh to remove extraneous MET info. Co-authored-by: Michelle Harrold <Michelle.Harrold@noaa.gov> * Pull in updates from develop that were not merging properly. Small change to config.community to turn off vx tasks by default. * Did manual merge of these files because it was not handled properly automatically * Adding additional variables to METplus for regional workflow (#5) * Updates to address comments in PR review * Changed name of get_obs to remove _tn * Missed removal of on get_obs Co-authored-by: michelleharrold <harrold@ucar.edu> Co-authored-by: gsketefian <31046882+gsketefian@users.noreply.github.com> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> Co-authored-by: Lindsay <lblank@ucar.edu> Co-authored-by: Michelle Harrold <Michelle.Harrold@noaa.gov> Co-authored-by: PerryShafran-NOAA <62255233+PerryShafran-NOAA@users.noreply.github.com>

@JeffBeck-NOAA

* Fix to post flat file. * Create MET and METplus config files under ush/templates/parm * Added script to pull and reorg ccpa data. Added a script to run gridstat with METplus. Updated MET and METplus config files. * Added new jjob for running grid-stat vx. Updated setup.sh to include grid-stat vx. Updated run_gridstatvx script. * Fixed typo on script name from ksh to sh * Moved some hard coded items out from the script to the XML * Updates to get METplus to run with fewer hard-coded paths. * Updates to add grid-stat task to XML generation. * Bug fixes for adding grid-stat to XML generation * Updates to remove hard-coded paths in config files * Change log dir to put master_metplus log file with other logs under log/, rather than default logs/. * Updates to generate xml without hard-coded paths for MET * Add hera gridstat module file * Add METplus point-stat task for both sfc and upper air * Small tweaks to remove hard coded paths and add some flexibility * Updates for adding point-stat into auto-generated xml * Add in function to set point-stat task to FALSE * Final tweaks to get it to generate the xml correctly * Minor updates to run ensure 0,6,12,18 * Tweaks to var list for Point-Stat * Add METplus settings to config_defaults * Move quote for end of settings and fix extra comment. * Fix typos to populate templates correctly * Updated to include SCRIPTSDIR and other MET specific settings along with updates to FHR syntax * Update module loads on hera * Fixed comment for BOTH_VARn_THRESH to avoid syntax issues * Added files to run grid_stat for a variety of accumulation intervals, including 3, 6, and 24h * Added module load hpss * Remove module load informatino from these scripts * Updated the method of turning on/off vx tasks using jinja template if statement * Remove commented out lines of code. Fixed typo. Removed gen_wflow.out file. * Updated pull scripts to have file names dependent on date to pull from HPSS. Updated to export a few more local variables that METplus conf needed in scripts. Updated workflow to use service queue (for now) to for 1h grid_stat and point_stat run and default for 3+h accumulation grid_stat runs) * moved common_hera.conf to common.conf - no platform specific information included that needs to be handled. * Remove common_hera.conf * Add scripts to pull and process MRMS data from NOAA HPSS * Updates for REFC vx tasks * updates to obs pull scripts * Update for adding in reflectivity verification using MRMS analyses and updating name of model output to RRFS rather than HRRR * Updates to account for CCPA issues on HPSS - day off for 00-05 UTC directories * Verification mods to feature/add metplus (#1) * Remove unused/outdated code (#313) ## DESCRIPTION OF CHANGES: * In setup.sh and generate_FV3LAM_wflow.sh, remove temporary codes that fix bugs in the FV3_GFS_2017_gfdlmp_regional suite definition file because those bugs have been fixed (in the ufs-weather-model repo). * In setup.sh, remove block of code that is no longer necessary because chgres_cube can now initialize from external model data with either 4 or 9 soil levels, and run with LSMs of either 4 or 9 soil levels. * Remove modifications to LD_LIBRARY_PATH in exregional_run_fcst.sh. * For the make_ics and make_lbcs tasks, move the setting of APRUN and other machine-specific actions from the J-job to the ex-script in order to be consistent with the other workflow tasks. * Fix indentation and edit comments. * Remove unused file load_fv3gfs_modules.sh. ## TESTS CONDUCTED: Ran two WE2E tests on hera, new_ESGgrid and new_GFDLgrid: * new_ESGgrid uses the FV3_GFS_2017_gfdlmp_regional suite. The test was successful. * new_GFDLgrid uses the FV3_GFS_2017_gfdlmp suite. The test was successful. ## ISSUE (optional): This resolves issue #198. * Add and call a function that checks for use of Thompson microphysics parameterization in the SDF and if so, adjusts certain workflow arrays to contain the names and other associated values of the fixed files needed by this parameterization so that those files are automatically copied and/or linked to. (#319) ## DESCRIPTION OF CHANGES: Add and call a function that checks for use of Thompson microphysics parameterization in the suite definition file (SDF). If not, do nothing. If so, add to the appropriate workflow arrays the names and other associated values of the fixed files needed by this parameterization so that they are automatically copied and/or linked to instead of being regenerated from scratch in the run_fcst task. ## TESTS CONDUCTED: On hera, ran two WE2E tests, one in NCO mode (nco_RRFS_CONUS_25km_HRRRX_RAPX) and the other in community mode (suite_FV3_GSD_v0). These use suites FV3_GSD_SAR and FV3_GSD_v0, respectively, and both of these call Thompson microphysics. Both succeeded. ## ISSUE (optional): This PR resolves issue #297. * RRFS_v1beta SDF changes after reverting from GSL to GFS GWD suite (#322) (#327) ## DESCRIPTION OF CHANGES: Removed checks on the RRFS_v1beta SDF implemented for use with the GSL GWD suite (now uses the GFS GWD suite). No longer copies staged orography files necessary for the GSL GWD suite. ## TESTS CONDUCTED: Runs to completion on Hera. End-to-end runs DOT_OR_USCORE and suite_FV3_RRFS_v1beta succeeded on Cheyenne. Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> * Update FV3.input.nml for fhzero = 1.0 * Updated conf files for file name conventions. * Updated MET scripts and MRMS pull scripts. * Adjust RRFS_CONUS_... grids (#294) ## DESCRIPTION OF CHANGES: * Adjust RRFS_CONUS_25km, RRFS_CONUS_13km, and RRFS_CONUS_3km grid parameters so that: * All grids, including their 4-cell-wide halos, lie completely within the HRRRX domain. * All grids have dimensions nx and ny that factor "nicely", i.e. they don't have factors greather than 7. * The write-component grids corresponding to these three native grids cover as much of the native grids as possible without going outside of the native grid boundaries. The updated NCL scripts (see below) were used to generate the write-component grid parameters. * For the RRFS_CONUS_13km grid, reduce the time step (DT_ATMOS) from 180sec to 45sec. This is necessary to get a successful forecast with the GSD_SAR suite, and thus likely also the RRFS_v1beta suite. * Modify WE2E testing system as follows: * Add new tests with the RRFS_CONUS_25km, RRFS_CONUS_13km, and RRFS_CONUS_3km grids that use the GFS_v15p2 and RRFS_v1beta suites (which are now the ones officially supported in the first release of the short-range weather app) instead of the GFS_v16beta and GSD_SAR suites, respectively. * For clarity, rename the test configuration files that use the GFS_v16beta and GSD_SAR suites so they include the suite name. * Update list of WE2E tests (baselines_list.txt). * Update the NCL plotting scripts to be able to plot grids with the latest version of the workflow. ## TESTS CONDUCTED: On hera, ran tests with all three grids with the GFS_v15p2 and RRFS_v1beta suites (a total of 6 tests). All were successful. * Remove redundant model_configure.${CCPP_PHYS_SUITE} template files; use Jinja2 to create model_configure (#321) ## DESCRIPTION OF CHANGES: * Remove model_configure template files whose names depend on the physics suite, i.e. files with names of the form model_configure.${CCPP_PHYS_SUITE}. Only a single template file is needed because the contents of the model_configure file are not suite dependent. This leaves just one template file (named model_configure). * Change the function create_model_configure_file.sh and the template file model_configure so they use jinja2 instead of sed to replace placeholder values. * Absorb the contents of the write-component template files wrtcmp_lambert_conformal, wrtcmp_regional_latlon, and wrtcmp_rotated_latlon into the new jinja2-compliant model_configure file. We can do this because Jinja2 allows use of if-statements in the template file. * In the new model_configure jinja2 template file, include comments to explain the various write-component parameters. ## TESTS CONDUCTED: On Hera, ran the two WE2E tests new_ESGgrid and new_GFDLgrid. The first uses a "lambert_conformal" type of write-component grid, and the second uses a "rotated_latlon" type of write-component grid. (The write-component also allows "regional_latlon" type grids, which is just the usual earth-relative latlon coordinate system, but we do not have any cases that use that.) Both tests succeeded. ## ISSUE (optional): This PR resolves issue #281. * Add Thompson ice- and water-friendly aerosol climo file support (#332) * Add if statement in set_thompson_mp_fix_files.sh to source Thompson climo file when using a combination of a Thompson-based SDF and non-RAP/HRRR external model data * Modify if statement based on external models for Thompson climo file * Remove workflow variable EMC_GRID_NAME (#333) ## DESCRIPTION OF CHANGES: * Remove the workflow variable EMC_GRID_NAME. Henceforth, PREDEF_GRID_NAME is the only variable that can be used to set the name of the predefined grid to use. * Make appropriate change of variable name (EMC_GRID_NAME --> PREDEF_GRID_NAME) in the WE2E test configuration files. * Change anywhere the "conus" and "conus_c96" grids are specified to "EMC_CONUS_3km" and "EMC_CONUS_coarse", respectively. * Rename WE2E test configuration files with names containing the strings "conus" and "conus_c96" by replacing these strings with "EMC_CONUS_3km" and "EMC_CONUS_coarse", respectively. * Update the list of WE2E test names (tests/baselines_list.txt). * Bug fixes not directly related to grids: * In config.nco.sh, remove settings of QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST since these are now set automatically (due to another PR). * In the template file FV3LAM_wflow.xml, add the ensemble member name after RUN_FCST_TN in the dependency of the run_post metatask. ## TESTS CONDUCTED: Since this change only affects runs in NCO mode, the following NCO-mode WE2E tests were rerun on hera, all successfully: ``` nco_EMC_CONUS_3km SUCCESS nco_EMC_CONUS_coarse SUCCESS nco_EMC_CONUS_coarse__suite_FV3_GFS_2017_gfdlmp SUCCESS nco_RRFS_CONUS_25km_HRRRX_RAPX SUCCESS nco_RRFS_CONUS_3km_FV3GFS_FV3GFS SUCCESS nco_RRFS_CONUS_3km_HRRRX_RAPX SUCCESS nco_ensemble SUCCESS ``` * Port workflow to Orion (#309) ## DESCRIPTION OF CHANGES: * Add stanzas for Orion where necessary. * Add new module files for Orion. * On Orion, both the slurm partition and the slurm QOS need to be specified in the rocoto XML in order to be able to have wall times longer than 30 mins (the partition needs to be specified because it is by default "debug", which has a limit of 30 mins). Thus, introduce modifications to more easily specify slurm partitions: * Remove the workflow variables QUEUE_DEFAULT_TAG, QUEUE_HPSS_TAG, and QUEUE_FCST_TAG that are currently used to determine whether QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST specify the names of queue/QOS's or slurm partitions. * Add the workflow variables PARTITION_DEFAULT_TAG, PARTITION_HPSS_TAG, and PARTITION_FCST_TAG. These will be used to specify slurm partitions only, and the variables QUEUE_DEFAULT, QUEUE_HPSS, and QUEUE_FCST will be used to specify queues/QOS's only. IMPORTANT NOTE: On Orion, in order to load the regional_workflow environment needed for generating an experiment, the user must first issue the following commands: ``` module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles module load miniconda3 conda activate regional_workflow ``` ## TESTS CONDUCTED: Ran 11 WE2E tests on Orion, Hera, and Cheyenne. Results on Orion: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km FAILURE - In the run_fcst task. * Error message: !!! (1) Error in subr radiation_aerosols: unrealistic surface pressure = 1 NaN new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` Results on Hera: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km SUCCESS new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` Results on Cheyenne: ``` community_ensemble_2mems SUCCESS DOT_OR_USCORE SUCCESS grid_GSD_HRRR_AK_50km FAILURE - In run_fcst task. * Error message: !!! (1) Error in subr radiation_aerosols: unrealistic surface pressure = 1 NaN new_ESGgrid SUCCESS new_GFDLgrid SUCCESS regional_001 SUCCESS regional_002 SUCCESS suite_FV3_GFS_v15p2 SUCCESS suite_FV3_GFS_v16beta SUCCESS suite_FV3_GSD_SAR SUCCESS suite_FV3_GSD_v0 SUCCESS ``` All succeed except GSD_HRRR_AK_50km on Orion and Cheyenne. It is not clear why grid_GSD_HRRR_AK_50km fails on Orion and Cheyenne but not Hera. Seems to point to a bug in the forecast model. These two failures are not so important since this grid will soon be deprecated. Also tested successfully on Jet by @JeffBeck-NOAA and on Odin and Stampede by @ywangwof. ## ISSUE: This resolves Issue #152. ## CONTRIBUTORS: @JeffBeck-NOAA @ywangwof @christinaholtNOAA * Removed comments from exregional_get_mrms_files.sh and removed fhzero from FV3.input.yml * Update FV3.input.nml for fhzero = 1.0 * Updated conf files for file name conventions. * Updated MET scripts and MRMS pull scripts. * Removed comments from exregional_get_mrms_files.sh and removed fhzero from FV3.input.yml Co-authored-by: gsketefian <31046882+gsketefian@users.noreply.github.com> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> Co-authored-by: Jamie Wolff <jwolff@ucar.edu> * Change cov_thresh for REFL to be a true max in nbrhood as SPC does. * Job script for get_obs_ccpa * Jobs script for get_obs_mrms * Jobs script for get_obs_ndas * Added external variables necessary to get_ccpa script * Updated workflow template with separate get obs tasks * Separated pull scripts from run scripts * Added necessary defaults/values for defining pull tasks * Added module files, default config.sh options, and changed dependencies for vx tasks * Changed name of new workflow to FV3LAM_wflow.xml * Added task get_obs_tn, removed config.sh, updated config_defaults and config.community.sh * Adjusted the community and default config files based on comments * Updated FV3LAM workflow * Fixed discrepancies in config.community.sh * Fixed discrepancies in config_defaults.sh * Fixed discrepancies in config_defaults.sh round 2 * Fixed discrepancies in config_defaults.sh round 3 * Fixed discrepancies in config_defaults.sh round 4 * Fixed discrepancies in config.community.sh round 2 * Fixed discrepancies in config.community.sh round 3 * Fixed discrepancies in generate_FV3LAM_wflow.sh * Fixed discrepancies in generate_FV3LAM_wflow.sh round 2 * Fixed discrepancies in generate_FV3LAM_wflow.sh round 3 * Updated FV3LAM_wflow template * Separated Pull Data Scripts from Run Vx Scripts: Feature/add_metplus (#2) * Job script for get_obs_ccpa * Jobs script for get_obs_mrms * Jobs script for get_obs_ndas * Added external variables necessary to get_ccpa script * Updated workflow template with separate get obs tasks * Separated pull scripts from run scripts * Added necessary defaults/values for defining pull tasks * Added module files, default config.sh options, and changed dependencies for vx tasks * Changed name of new workflow to FV3LAM_wflow.xml * Added task get_obs_tn, removed config.sh, updated config_defaults and config.community.sh * Adjusted the community and default config files based on comments * Updated FV3LAM workflow * Fixed discrepancies in config.community.sh * Fixed discrepancies in config_defaults.sh * Fixed discrepancies in config_defaults.sh round 2 * Fixed discrepancies in config_defaults.sh round 3 * Fixed discrepancies in config_defaults.sh round 4 * Fixed discrepancies in config.community.sh round 2 * Fixed discrepancies in config.community.sh round 3 * Fixed discrepancies in generate_FV3LAM_wflow.sh * Fixed discrepancies in generate_FV3LAM_wflow.sh round 2 * Fixed discrepancies in generate_FV3LAM_wflow.sh round 3 * Updated FV3LAM_wflow template * Fixed the dependencies of the vx tasks * Fixed Vx Task Dependencies in Workflow: Feature/add metplus (#3) * Job script for get_obs_ccpa * Jobs script for get_obs_mrms * Jobs script for get_obs_ndas * Added external variables necessary to get_ccpa script * Updated workflow template with separate get obs tasks * Separated pull scripts from run scripts * Added necessary defaults/values for defining pull tasks * Added module files, default config.sh options, and changed dependencies for vx tasks * Changed name of new workflow to FV3LAM_wflow.xml * Added task get_obs_tn, removed config.sh, updated config_defaults and config.community.sh * Adjusted the community and default config files based on comments * Updated FV3LAM workflow * Fixed discrepancies in config.community.sh * Fixed discrepancies in config_defaults.sh * Fixed discrepancies in config_defaults.sh round 2 * Fixed discrepancies in config_defaults.sh round 3 * Fixed discrepancies in config_defaults.sh round 4 * Fixed discrepancies in config.community.sh round 2 * Fixed discrepancies in config.community.sh round 3 * Fixed discrepancies in generate_FV3LAM_wflow.sh * Fixed discrepancies in generate_FV3LAM_wflow.sh round 2 * Fixed discrepancies in generate_FV3LAM_wflow.sh round 3 * Updated FV3LAM_wflow template * Fixed the dependencies of the vx tasks * Manual merge with develop that didn't seem to work before. Trying to get feature branch updated so it will run again! * Add local module files * Add environment variable for SCRIPTSDIR * Remove echo statement * Remove old module files * Update to config_default for walltime for ndas pull. Update to metplus parm for obs file template. Update to FV3LAM xml to not include 00 hour for verification * Update template to remove full path * Verification channges for obs. (#4) * Verification channges for obs. * Update config_defaults.sh for vx description * Update config_defaults.sh to remove extraneous MET info. Co-authored-by: Michelle Harrold <Michelle.Harrold@noaa.gov> * Initial METplus .confs and MET config files for EnsembleStat APCP * J-Job script for running ensemble stat * Exregional script for ensemble-stat * Added EnsembleStat.conf for A6 and A24. Added PCPCombine to A3, A6, and A24. * Added EnsembleStatConfig files for 6 and 24h * Copy of workflow template with precipitation ensemble tasks added. Will become main template when testing is complete * Added export statement for number of ensemble members * Added necessary task definitions in ush * Updated workflow to included ENTITY definitions for ensstat * Fixed typo * Added ens vx configs * Pull in updates from develop that were not merging properly. Small change to config.community to turn off vx tasks by default. * Added/mod files for point ens vx. * Updated metplus conf files for ens point vx * Did manual merge of these files because it was not handled properly automatically * Adding additional variables to METplus for regional workflow (#5) * Changes made based on meeting with Michelle and Jamie * Updating fork * Cleanup after merge * Added additional ens vx * Ensemble point vx mods * Additional updates for ens and det vx * ensgrid_mean and ensgrid_prob .conf files for APCP * Updates for ensemble vx. * Added mean and prob point-stat configs * Updates to ensgrid_vx * Updates for mean/prob vx. * Updates to FV3LAM_wflow.xml * Deterministic and ensembel vx updates. * Ensgrid mean * Update setup.sh * Changed workflow template title * Updates to deterministic and ensemble verification * Created EnsembleStat METplus conf and MET config files for REFC * Added reflectivity mean and prob METplus and MET config files. Updated APCP mean and prob METplus and MET config files. * Added all J-job scripts, exregional scripts, and necessary definitons for workflow generation for all ensgrid_mean and ensgrid_prob tasks * Updates to workflow to add ensgrid_vx * Changes I made to account for runtime errors. * Made changes to directory structures * Made changes to directory structures and variables * Changed log files and stage dir. * Changes for grid- and point-vx. * Updated METplus ensemble precip conf files. * Mods for ensemble and deterministic vx. * Change to GridStatConfig_REFC_mean * Updated EnsembleStat_REFC.conf * Updated to METv10.0.0 * Updated conf files for paths. * Updated FV3LAM_wflow.xml template. * Mods for vx dependencies * Updated for censor thresh in METplus conf files; changes to FV3LAM_wflow.xml after sync with develop. * Updated exregional_run_fcst.sh generate_FV3LAM_wflow.sh to address merge with develop. * Mods for ensemble precip vx, handling padded/non-padded ensemble member names, fixes for python environment for obs pull. * Changes to RETOP (units) and REFC (naming and level) verification. * Fix OUTPUT_BASE for deterministic vx. * Changes to some verification ex-scripts for syntax and path fixes. Included start end dates of incorrect 01-h CCPA data. Removed some extra lines in FV3LAM_wflow.xml template. * Changed comp. ref. variable name in GridStat_REFC_prob.conf * Changed comp. ref. level in GridStat_REFC_prob.conf * Updated logic for number padding in the directory name when running in ensemble mode. * Added MET ensemble vx WE2E test. * Modified location of obs to live outside cycle dir, allowing for obs to be shared across cycles. * Mods to address comments on PR575. * Updated ensemble METPlus conf files for changes to post output name. * Addessed comments in PR and mods for 10-m WIND. * Addressing final comments in PR. Co-authored-by: Jamie Wolff <jwolff@ucar.edu> Co-authored-by: gsketefian <31046882+gsketefian@users.noreply.github.com> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> Co-authored-by: JeffBeck-NOAA <55201531+JeffBeck-NOAA@users.noreply.github.com> Co-authored-by: lindsayrblank <lblank@ucar.edu> Co-authored-by: Michelle Harrold <Michelle.Harrold@noaa.gov> Co-authored-by: PerryShafran-NOAA <62255233+PerryShafran-NOAA@users.noreply.github.com>

…ack_addacorn Update Acorn modulefile to use spack-stack

From jkbk2004:fix/cheyenne-lmod

junwang-noaa mentioned this issue Nov 11, 2019

Bugfixes and gfs physics update #9

Merged

junwang-noaa closed this as completed Dec 19, 2019

climbfuji referenced this issue in climbfuji/ufs-weather-model Apr 6, 2020

Merge pull request #2 from JiliDong-NOAA/support/HAFS

d810f72

Merge remote-tracking branch 'upstream/develop' into support/HAFS

climbfuji referenced this issue in climbfuji/ufs-weather-model Jun 5, 2020

Merge pull request #2 from NCAR/dtc/develop

6780bd2

update

mlee03 pushed a commit to mlee03/ufs-weather-model that referenced this issue Feb 9, 2021

update to develop attemp ufs-community#2

e6cf417

binli2337 referenced this issue in binli2337/ufs-weather-model Apr 13, 2021

remove FoX (#2)

d58b5d9

remove FoX dependency building and use ESMF Config instead. Co-authored-by: Jun Wang <junwang-noaa@users.noreply.github.com>

aerorahul pushed a commit to aerorahul/ufs-weather-model that referenced this issue Sep 22, 2021

Merge pull request ufs-community#2 from ufs-community/develop

fc187e6

Upstream update 10/1/2020

LarissaReames-NOAA pushed a commit to LarissaReames-NOAA/ufs-weather-model that referenced this issue Oct 22, 2021

Merge pull request ufs-community#2 from yangfanglin/gfsv16_physupdt

1f91d39

VLab Issue #68141

LarissaReames-NOAA pushed a commit to LarissaReames-NOAA/ufs-weather-model that referenced this issue Oct 22, 2021

Merge pull request ufs-community#2 from NOAA-EMC/dev/emc

feaf652

update noaa-psd fork with EMC develop branch

yangfanglin mentioned this issue Oct 27, 2021

Add a WAM regression test with the MULTI_GASES and MOLECULAR_DIFFUSION options on #714

Merged

10 tasks

yangfanglin mentioned this issue Mar 15, 2022

tracer updates in atmoshpere history files #469

Open

WenMeng-NOAA mentioned this issue Jun 6, 2022

GFS V16 in-line post issue #1244

Closed

BrianCurtis-NOAA mentioned this issue Apr 24, 2023

Use nccmp to compare netcdf files in regression test on NOAA R&D machines. Update WW3 #1702

Merged

37 tasks

AlexanderRichert-NOAA pushed a commit to AlexanderRichert-NOAA/ufs-weather-model that referenced this issue Apr 26, 2023

Merge pull request ufs-community#2 from AlexanderRichert-NOAA/spackst…

2f7bc23

…ack_addacorn Update Acorn modulefile to use spack-stack

mkavulich pushed a commit to mkavulich/ufs-weather-model that referenced this issue Aug 24, 2023

Merge pull request ufs-community#2 from dustinswales/hotfix_cheyenneLMOD

80995ff

From jkbk2004:fix/cheyenne-lmod

zach1221 mentioned this issue Mar 12, 2024

Incorporate csawMG update and pass both intel and GNU RT tests #2180

Merged

14 tasks

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Repository should have a README.md #2

Repository should have a README.md #2

underwoo commented Oct 18, 2019

junwang-noaa commented Dec 19, 2019

Repository should have a README.md #2

Repository should have a README.md #2

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underwoo commented Oct 18, 2019

junwang-noaa commented Dec 19, 2019