There are a couple separate lists of tools contained here. The sum total of them make up the set of tools installed in UseGalaxy.eu
| File | Tools |
|---|---|
| asaim | |
| epigenetics | |
| graphclust | |
| metabolomics | |
| tools_galaxyp | Proteomics Tools |
| tools_iuc | Most of the tools maintained by IUC. We aren't currently planning on automatically adding all the tools from IUC but we may reconsider this later. |
| tools | Tools not contained in one of the other files. |
export PATH=/usr/local/tools/_conda/bin/:$PATH
source activate ephemeris
shed-tools install -t tools.yaml -a $GALAXY_API_KEY --galaxy https://galaxy.uni-freiburg.deshed-tools install -a $GALAXY_API_KEY --galaxy https://galaxy.uni-freiburg.de --name annotatemyids --owner iuc --section_label 'Annotation'