Update clustering resolution in tests

vib-singlecell-nf · Nov 30, 2021 · 2f9e645 · 2f9e645
1 parent 066bbcf
commit 2f9e645
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Showing 13 changed files with 49 additions and 1 deletion.
diff --git a/conf/test__bbknn.config b/conf/test__bbknn.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
     }
 }

diff --git a/conf/test__bbknn_scenic.config b/conf/test__bbknn_scenic.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         scenic {
             numWorkers = 2

diff --git a/conf/test__harmony.config b/conf/test__harmony.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
     }
 }

diff --git a/conf/test__harmony_scenic.config b/conf/test__harmony_scenic.config
@@ -30,6 +30,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         scenic {
             numWorkers = 2

diff --git a/conf/test__mnncorrect.config b/conf/test__mnncorrect.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
     }
 }

diff --git a/conf/test__single_sample.config b/conf/test__single_sample.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
     }
 }

diff --git a/conf/test__single_sample_decontx_correct.config b/conf/test__single_sample_decontx_correct.config
@@ -22,6 +22,10 @@ params {
                     nComps = 10
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         celda {
             container = 'vibsinglecellnf/celda:1.4.5'

diff --git a/conf/test__single_sample_decontx_correct_scrublet.config b/conf/test__single_sample_decontx_correct_scrublet.config
@@ -22,6 +22,10 @@ params {
                     nComps = 10
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         celda {
             container = 'vibsinglecellnf/celda:1.4.5'

diff --git a/conf/test__single_sample_decontx_filter.config b/conf/test__single_sample_decontx_filter.config
@@ -22,6 +22,10 @@ params {
                     nComps = 10
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         celda {
             container = 'vibsinglecellnf/celda:1.4.5'

diff --git a/conf/test__single_sample_param_exploration.config b/conf/test__single_sample_param_exploration.config
@@ -23,7 +23,7 @@ params {
                 }
             }
             clustering {
-                resolutions = [0.8,1.0]
+                resolutions = [1.0,1.2]
             }
         }
     }

diff --git a/conf/test__single_sample_scenic.config b/conf/test__single_sample_scenic.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         scenic {
             grn {

diff --git a/conf/test__single_sample_scenic_multiruns.config b/conf/test__single_sample_scenic_multiruns.config
@@ -22,6 +22,10 @@ params {
                     nComps = 2
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         scenic {
             //filteredLoom = 'https://raw.githubusercontent.com/aertslab/SCENICprotocol/master/example/expr_mat_small.loom'

diff --git a/conf/test__single_sample_scrublet.config b/conf/test__single_sample_scrublet.config
@@ -22,6 +22,10 @@ params {
                     nComps = 10
                 }
             }
+            clustering {
+                method = 'louvain' 
+                resolution = 1
+            }
         }
         scrublet {
             container = 'vibsinglecellnf/scrublet:0.2.3'
-Original file line number
+Diff line change
@@ Expand Up / @@ -23,7 +23,7 @@ params { @@
                     }
                 }
                 clustering {
-                    resolutions = [0.8,1.0]
+                    resolutions = [1.0,1.2]
                 }
             }
         }
@@ Expand Down @@