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[BUG]Module compile error #250

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xuzhougeng opened this issue Nov 11, 2020 · 2 comments · Fixed by #262
Closed

[BUG]Module compile error #250

xuzhougeng opened this issue Nov 11, 2020 · 2 comments · Fixed by #262
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@xuzhougeng
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Describe the bug

When I run the quick test as descripted in https://vsn-pipelines.readthedocs.io/en/latest/getting-started.html

I met the following problem.

image

To fix this problem, I used the same version 19.10.0 in quick start, and I get the following error message.

image

Then I still use the newest version of nextflow, but replace the variable channel to ch in tenx.nf and file.nf.

And I can get the following message.

image

Finally I know I need to use the nextflow (v 20.04 ) to run this pipeline.

Could you add the this version requirement message in the README and tutorial ? Or add the version check code in main.nf at beginning?

@xuzhougeng xuzhougeng added the bug Something isn't working label Nov 11, 2020
@dweemx
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dweemx commented Nov 12, 2020

Hi @xuzhougeng ,

Thanks for reporting back.
It seems that Nextflow version 20.10.0 has introduced some backward incompatible changes.
I have updated the docs as suggested. These changes are currently in the develop branch: https://vsn-pipelines.readthedocs.io/en/develop/getting-started.html

@mengchengyao
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Thanks,I got same error and sovled with your help.

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3 participants