4.3.1

What's Changed

• Bump baton from 4.3.2 to 5.0.0 by @kjsanger in #407
• Docker build fixes by @kjsanger in #409
• Fix appuser creation to occur only if user is absent by @kjsanger in #410

Full Changelog: 4.3.0...4.3.1

4.3.0

What's Changed

• Sample metadata ont tests by @marcomoscasgr in #404
• Bump pyenv to 2.4.16 by @kjsanger in #408

Full Changelog: 4.2.2...4.3.0

4.2.2

What's Changed

• Bump setuptools from 75.3.0 to 75.4.0 by @dependabot in #390
• Bump setuptools from 75.4.0 to 75.5.0 by @dependabot in #391
• Bump setuptools from 75.5.0 to 75.6.0 by @dependabot in #392
• Bump rich from 13.7.1 to 13.9.4 by @dependabot in #385
• Bump cryptography from 43.0.3 to 44.0.0 by @dependabot in #393
• Bump pytest from 8.3.3 to 8.3.4 by @dependabot in #394
• Added new sample metadata. by @mgcam in #395
• Bump Singularity to 4.2.2 by @kjsanger in #398
• Bump setuptools from 75.6.0 to 75.7.0 by @dependabot in #397
• Add support for data objects having metadata for >1 sample by @kjsanger in #396
• Bump setuptools from 75.7.0 to 75.8.0 by @dependabot in #399
• Bump setuptools-git-versioning from 2.0.0 to 2.1.0 by @dependabot in #402
• Bump structlog from 24.2.0 to 25.1.0 by @dependabot in #403
• Fix passing of --end-date CLI argument to query by @kjsanger in #405

New Contributors

• @mgcam made their first contribution in #395

Full Changelog: 4.2.1...4.2.2

4.2.1

What's Changed

• Add release instructions to README by @kjsanger in #387
• Work around iquest's bad behaviour by @kjsanger in #389

Full Changelog: 4.2.0...4.2.1

4.2.0

What's Changed

• Bump cryptography from 43.0.0 to 43.0.1 by @dependabot in #359
• Bump sqlalchemy from 2.0.32 to 2.0.33 by @dependabot in #360
• Bump setuptools from 74.0.0 to 74.1.1 by @dependabot in #361
• Add iRODS 4.3.3 by @kjsanger in #363
• Bump setuptools from 74.1.1 to 74.1.2 by @dependabot in #364
• Bump sqlalchemy from 2.0.33 to 2.0.34 by @dependabot in #362
• Add simplified Docker Compose support for tests by @kjsanger in #356
• Bump pytest from 8.3.2 to 8.3.3 by @dependabot in #366
• Bump setuptools from 74.1.2 to 75.0.0 by @dependabot in #367
• Bump sqlalchemy from 2.0.34 to 2.0.35 by @dependabot in #369
• Bump setuptools from 75.0.0 to 75.1.0 by @dependabot in #368
• Fix punctuation by @kjsanger in #370
• Refactor to depend on npg-python-lib by @kjsanger in #371
• Use dataclasses for configuration by @kjsanger in #373
• Add version ranges to pyproject.toml by @kjsanger in #375
• Bump black from 24.8.0 to 24.10.0 by @dependabot in #376
• Bump setuptools from 75.1.0 to 75.2.0 by @dependabot in #378
• Bump cryptography from 43.0.1 to 43.0.3 by @dependabot in #380
• Bump sqlalchemy from 2.0.35 to 2.0.36 by @dependabot in #377
• Add --json option to locate-data-objects by @kjsanger in #379
• Bump setuptools from 75.2.0 to 75.3.0 by @dependabot in #382
• Bump yattag from 1.16.0 to 1.16.1 by @dependabot in #384
• Add command line option to find recently created ONT run collections by @kjsanger in #383
• Add log entries for the application and CLI names by @kjsanger in #386

Full Changelog: 4.1.0...4.2.0

4.1.0

What's Changed

• Feature: extend barcode collection search by @marcomoscasgr in #323
• Bump setuptools from 70.0.0 to 70.1.1 by @dependabot in #329
• Bump sqlalchemy from 2.0.30 to 2.0.31 by @dependabot in #327
• Bump setuptools from 70.1.1 to 70.2.0 by @dependabot in #330
• Bump setuptools from 70.2.0 to 70.3.0 by @dependabot in #331
• Bump setuptools from 70.3.0 to 71.0.0 by @dependabot in #339
• Bump setuptools from 71.0.0 to 71.1.0 by @dependabot in #343
• Bump pytest from 8.2.2 to 8.3.1 by @dependabot in #342
• Bump pytest from 8.3.1 to 8.3.2 by @dependabot in #345
• Bump cryptography from 42.0.8 to 43.0.0 by @dependabot in #344
• update container labels by @avnishsinghh in #346
• Bump setuptools from 71.1.0 to 72.1.0 by @dependabot in #347
• Bump black from 24.4.2 to 24.8.0 by @dependabot in #348
• Bump setuptools from 72.1.0 to 72.2.0 by @dependabot in #351
• Bump sqlalchemy from 2.0.31 to 2.0.32 by @dependabot in #349
• Bump setuptools from 72.2.0 to 73.0.0 by @dependabot in #352
• Bump yattag from 1.15.2 to 1.16.0 by @dependabot in #350
• Bump setuptools from 73.0.0 to 73.0.1 by @dependabot in #353
• Bump setuptools from 73.0.1 to 74.0.0 by @dependabot in #355
• Add missing database connection pool arguments by @kjsanger in #357

New Contributors

• @avnishsinghh made their first contribution in #346

Full Changelog: 4.0.2...4.1.0

4.0.2

What's Changed

• Bump partisan from 2.10.0 to 2.10.2 by @kjsanger in #326

Full Changelog: 4.0.1...4.0.2

4.0.1

What's Changed

• Set ACL zone for study/sample metadata updates by @kjsanger in #324

Full Changelog: 4.0.0...4.0.1

4.0.0

What's Changed

• Bump setuptools from 69.5.1 to 70.0.0 by @dependabot in #313
• Bump structlog from 24.1.0 to 24.2.0 by @dependabot in #316
• Bump cryptography from 42.0.7 to 42.0.8 by @dependabot in #319
• Bump pytest from 8.2.1 to 8.2.2 by @dependabot in #320
• Fix study/sample metadata updates not updating permissions by @kjsanger in #318
• Fix association of VFC files with related CRAM files by @kjsanger in #322

Full Changelog: 3.1.4...4.0.0

3.1.4

What's Changed

• Bump pytest from 8.2.0 to 8.2.1 by @dependabot in #311
• Bump pymysql from 1.1.0 to 1.1.1 by @dependabot in #314
• Fix performance issue where debug code was left in production by @kjsanger in #315

Full Changelog: 3.1.3...3.1.4