Skip to content

Issues: Clinical-Genomics/genmod

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 86 Closed
22 Open 86 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Ensure "interesting" SO terms are up to date, and ideally synced by config
#156 opened Nov 28, 2024 by dnil
TODO on SV annotation - end looks odd
#155 opened Nov 28, 2024 by dnil
Lint issues enhancement QualityOfLife Task
#154 opened Nov 27, 2024 by dnil
1
Up to date GitHub pages documentation Documentation
#150 opened Nov 14, 2024 by fellen31
genmod annotate - MT vs (chr)M bug question
#149 opened Nov 12, 2024 by fellen31
Compounds only scores first family in VCF
#148 opened Nov 11, 2024 by fellen31
2
genmod score reorders variants - order not compatible with bgzip & tabix bug
#147 opened Oct 31, 2024 by fellen31
How to interpret two or more inheritance mode given for a variant?
#145 opened Oct 28, 2024 by rfarhad
Use uv enhancement
#143 opened Oct 24, 2024 by dnil
1
@dnil
Scoring an empty VCF QualityOfLife
#130 opened Jul 25, 2024 by fellen31
@fellen31
Silently missing values when using integer format in rank model and encountering a float value enhancement
#128 opened Mar 19, 2024 by Jakob37
2
Phased models bugged? bug
#126 opened Jan 11, 2024 by dnil
@fellen31
Change or document AR_compound low scoring compound penalty Task
#107 opened Nov 28, 2022 by dnil
4
Compound is missed if one parent is genotyped for each variant bug
#99 opened Jan 18, 2021 by bartcharbon
@dnil @jemten
5
ANN standard format enhancement
#96 opened Aug 13, 2020 by dridk
Implement a tier based ranking for somatic mutations enhancement
#95 opened May 27, 2020 by hassanfa
3
genmod score, data_type=string appears to match when the rule is a substring of the string in the VCF bug
#87 opened Jun 11, 2018 by bjhall
@jemten
6
"record_rule = max" appears to prioritize based on max(value) rather than max(score) Task
#86 opened Jun 11, 2018 by bjhall
2
CSQ field is not parsed properly in genmod score when using --skip_plugin_check Task
#85 opened May 21, 2018 by hassanfa
2
Modify rank model for reduced penetrance genes Under discussion
#69 opened Dec 2, 2016 by henrikstranneheim
1
Add support for IMPRECISE variants when querying a ref vcf enhancement
#61 opened May 12, 2016 by henrikstranneheim
Add support for MT inheritance models enhancement
#44 opened Oct 19, 2015 by henrikstranneheim
3
ProTip! Find all open issues with in progress development work with linked:pr.