New Bnd + New Save method (#110)

* Bug fix and implement  no-flux approach

* fix no flux top and right bnd

* Update Boundary.cu

Added new ABS bnd fcn for flux

* Fix new halo wall bnds

* convert test into proper CI test

* Fix ABS1D Q calculations

* ABS1DQ clean function call and add qmean

* ABS1DQ Fix h miising in fctn call

* Add New "NoFlux" Bnd to BBox bnd

* Fix case on header call

* fix on left and bot wall

* make test for all side

* u v bnd fix

* add comment to test

* clean up the function

* Update Boundary.h

* implement handling fcnt for flux bnd

* Fix wall bnd for Left and right side

Also improve the test!

* Update Testing.cu

* fix for flux test-demo

* Update Boundary.cu

* build new structures to support AOI bnds

* Add workflow for new bnd initialisation

* Update InitialConditions.cu

* Start the init bnd functionality

* Fix compile error forcing.h

* Update InitialConditions.cu

* fix to compile

* Update ReadInput.cu

* progress new bnd segment

* Update ReadInput.cu

* Add bndpoly functionality (Work in progress)

* Added function to read bnd segment polygon

* remove fileexist function

* add new bnd seg to GPU mem

* Add fill value of 0 for qmean

* finish main workflow for new BND for GPU

* Clean-up and debugging new boundary

* DEBUG ABS bnd

* Add limiter to remove instability near dry cells

* Add taper to initial condition

* Fix Dynamic forcing bnd

* Ooops

* debug check

* Add CPU functions for bnd flux

* Update Testing.cu

* prevent fail in CPUvsGPU test

* Bring A100 fix to the new boundary to better test on HPC. this should be descarde if it fails but may be pulled to Dev branch if successfull. (#109)

* switch off deflate

* Add function to optimise output writing

* Update Write_netcdf.cu

* debug level index when writting

* fix + update of def nc var

* Make loop increment declaration cleaner

* Hotfix for deform

This has been broken for a while!

* Try fix aoi polygon

* Add parameter to switch on/off the saving per block feature

* Update ReadInput.cu

* Fix GPU/CPU difference in new bnd

* Fix failing test 0

* Fix AOI wall test

* Update Boundary.cu

* Update ReadInput.cu

* Update main.yml

* Update main.yml

* Fix missing brace in testing

.github/workflows/main.yml

@@ -6,9 +6,9 @@ name: CI
 on:
   # Triggers the workflow on push or pull request events but only for the master branch
   push:
-    branches: [ development ]
+    branches: [ development, Test_new_BND_A100]
   pull_request:
-    branches: [ development ]
+    branches: [ development, Test_new_BND_A100]
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:

src/Arrays.h

@@ -59,6 +59,15 @@ struct AdvanceP
 };
 
 
+struct outP
+{
+	float* z;
+	short* z_s;
+	int level;
+	double xmin, xmax, ymin, ymax;
+};
+
+
 struct maskinfo 
 {
 
@@ -67,8 +76,13 @@ struct maskinfo
 	int* blks; // array of block where bnd applies 
 	// 8 digit binary where 1 is a mask and 0 is not a mask with the first digit represent the left bottom side the rest is clockwise (i.e.left-bot left-top, top-left, top-right, right-top, right-bot, bot-right, bot-left)
 	int* side; // e.g. 11000000 for the entire left side being a mask
+
+	int type = 0;
+
+
 };
 
+
 // outzone info used to actually write the nc files (one nc file by zone, the default zone is the full domain)
 struct outzoneB 
 {