Fix setup.sh script and add check for samtools in PATH #31
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added 2 commits
November 5, 2020 13:41
tinyheero
changed the title
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Looks good! Thanks for the fix. |
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This PR
setup.shscript where it doesn't update the hisat2 submodule and build it:git submodule init; git submodule updateneed to run from the root directory of the repository. The currentsetup.shscript changes to thehisat2folder and then tries to run these commands throwing an error, which doesn't get caught by the script.samtoolsis in the PATH or not and throws an error if not.